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Package: FLOWMR 1.0

Zixuan Wu

FLOWMR: An R Package for Mendelian Randomization in the mediation setting

A Bayesian framework for Mendelian Randomization in the mediation setting.

Authors:Zixuan Wu [aut, cre], Ethan Lewis [aut], Qingyuan Zhao [aut], Jingshu Wang [aut]

FLOWMR_1.0.tar.gz
FLOWMR_1.0.zip(r-4.5)FLOWMR_1.0.zip(r-4.4)FLOWMR_1.0.zip(r-4.3)
FLOWMR_1.0.tgz(r-4.5-x86_64)FLOWMR_1.0.tgz(r-4.5-arm64)FLOWMR_1.0.tgz(r-4.4-x86_64)FLOWMR_1.0.tgz(r-4.4-arm64)FLOWMR_1.0.tgz(r-4.3-x86_64)FLOWMR_1.0.tgz(r-4.3-arm64)
FLOWMR_1.0.tar.gz(r-4.5-noble)FLOWMR_1.0.tar.gz(r-4.4-noble)
FLOWMR_1.0.tgz(r-4.4-emscripten)FLOWMR_1.0.tgz(r-4.3-emscripten)
FLOWMR.pdf |FLOWMR.html✨
FLOWMR/json (API)

# Install 'FLOWMR' in R:

install.packages('FLOWMR', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zixuanwu1/flow-mr/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

On CRAN:

openblas cpp openmp

3.60 score 8 stars 15 exports 37 dependencies

Last updated 13 hours agofrom:2165c20f08. Checks:1 ERROR, 11 WARNING. Indexed: no.

Target	Result	Latest binary
Doc / Vignettes	FAIL	Mar 13 2025
R-4.5-win-x86_64	WARNING	Mar 13 2025
R-4.5-mac-x86_64	WARNING	Mar 13 2025
R-4.5-mac-aarch64	WARNING	Mar 13 2025
R-4.5-linux-x86_64	WARNING	Mar 13 2025
R-4.4-win-x86_64	WARNING	Mar 13 2025
R-4.4-mac-x86_64	WARNING	Mar 13 2025
R-4.4-mac-aarch64	WARNING	Mar 13 2025
R-4.4-linux-x86_64	WARNING	Mar 13 2025
R-4.3-win-x86_64	WARNING	Mar 13 2025
R-4.3-mac-x86_64	WARNING	Mar 13 2025
R-4.3-mac-aarch64	WARNING	Mar 13 2025

Exports:BayesMediation compute_total convert estimates gibbs_sampler gibbs_sampler_with_corr gibbs_wrapper indirect_effect random_upper_tri result_process sigma_objective summary_gibbs total_effect traceplot zero.centered.em

Dependencies:abind cli coda codetools colorspace doParallel fansi farver foreach ggplot2 glue gtable isoband iterators labeling lattice lifecycle magic magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer Rcpp RcppArmadillo rlang scales tibble utf8 vctrs viridisLite withr

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
An R Package for Mendelian Randomization in the mediation setting	FLOWMR-package FLOWMR
BayesMediation	BayesMediation
Perform Gibbs sampling for mediation MR without correlation	gibbs_sampler
Perform Gibbs sampling for mediation MR with correlation	gibbs_sampler_with_corr
Gibbs sampler	gibbs_wrapper
Indirrect effedt	indirect_effect
Produce a summary table of the output from gibbs_wrapper.	summary_gibbs
Total effect	total_effect
Produce traceplot for the specified parameter	traceplot
Perform EM Algorithm on Pleiotropy	zero.centered.em