{
  "_id": "6a2fdb823efcd9bda4338ae5",
  "Package": "MRBEE",
  "Type": "Package",
  "Title": "Mendelian Randomization using Bias-Corrected Estimating Equation\nand Iterative Pleiotropy Testing",
  "Version": "1.0.0",
  "Authors@R": "c(person(\"Noah\", \"Lorincz-Comi\", email = \"njl96@case.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0517-2499\")),\nperson(\"Yihe\", \"Yang\", email = \"yxy1234@case.edu\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-6563-3579\")))",
  "Description": "This package performs multivariate Mendelian\nrandomization. It is characterized by the removal of\nmeasurement error bias caused by the estimation error of GWAS\neffect size estimates using an unbiased estimating function in\nmeasurement error analysis. It also utilizes a pleiotropy test\nto dynamically detect and remove potential pleiotropy, making\nthe causal effect robust to pleiotropy.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "LazyDataCompression": "xz",
  "Repository": "https://mrcieu.r-universe.dev",
  "Date/Publication": "2026-05-16 02:35:38 UTC",
  "RemoteUrl": "https://github.com/noahlorinczcomi/MRBEE",
  "RemoteRef": "HEAD",
  "RemoteSha": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-15 10:56:22 UTC",
    "User": "root"
  },
  "Author": "Noah Lorincz-Comi [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0517-2499>),\nYihe Yang [aut] (ORCID: <https://orcid.org/0000-0001-6563-3579>)",
  "Maintainer": "Noah Lorincz-Comi <njl96@case.edu>",
  "MD5sum": "227e20d7eced307af7b1c862e4f93457",
  "_user": "mrcieu",
  "_type": "src",
  "_file": "MRBEE_1.0.0.tar.gz",
  "_fileid": "c50abfd47d13642bdfd1058cd1dee7e1a14d49bd92c51857c1ae7d00799d8da0",
  "_filesize": 6521894,
  "_sha256": "c50abfd47d13642bdfd1058cd1dee7e1a14d49bd92c51857c1ae7d00799d8da0",
  "_created": "2026-06-15T10:56:22.000Z",
  "_published": "2026-06-15T11:01:21.980Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 81404260766,
      "time": 204,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7636114269"
    },
    {
      "job": 81404260771,
      "time": 155,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7636097945"
    },
    {
      "job": 81404260759,
      "time": 137,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7636091418"
    },
    {
      "job": 81404260843,
      "time": 126,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7636087573"
    },
    {
      "job": 81403571619,
      "time": 245,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7636041842"
    },
    {
      "job": 81404260737,
      "time": 126,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7636087798"
    },
    {
      "job": 81404260756,
      "time": 141,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7636094616"
    },
    {
      "job": 81404260852,
      "time": 119,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7636089315"
    },
    {
      "job": 81404260784,
      "time": 120,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7636087194"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mrcieu/actions/runs/27541296868",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/noahlorinczcomi/MRBEE",
  "_commit": {
    "id": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
    "author": "Harry Yihe Yang <96660799+harryyiheyang@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #9 from noahlorinczcomi/cli\n\nfeat: CLI",
    "time": 1778898938
  },
  "_maintainer": {
    "name": "Noah Lorincz-Comi",
    "email": "njl96@case.edu",
    "login": "noahlorinczcomi",
    "orcid": "0000-0002-0517-2499",
    "description": "",
    "uuid": 39975632
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "FDRestimation",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "noahlorinczcomi",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-24",
      "n": 3
    },
    {
      "week": "2026-20",
      "n": 2
    }
  ],
  "_tags": [
    {
      "name": "v1.0.0",
      "date": "2026-05-16"
    }
  ],
  "_stars": 9,
  "_contributors": [
    {
      "user": "noahlorinczcomi",
      "count": 191,
      "uuid": 39975632
    },
    {
      "user": "remlapmot",
      "count": 16,
      "uuid": 3777473
    },
    {
      "user": "harryyiheyang",
      "count": 8,
      "uuid": 96660799
    }
  ],
  "_userbio": {
    "uuid": 15654827,
    "type": "organization",
    "name": "MRC Integrative Epidemiology Unit",
    "followers": 250
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MRBEE"
  },
  "_devurl": "https://github.com/noahlorinczcomi/mrbee",
  "_searchresults": 15,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MRBEE.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "errorCov",
    "filter_align",
    "Joint.test",
    "MRBEE.IMRP",
    "MRBEE.IMRP.Egger",
    "MRBEE.IMRP.UV"
  ],
  "_datasets": [
    {
      "name": "hapmap3",
      "title": "HapMap3 and UKBB Genotype SNP Data",
      "object": "hapmap3",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "SNP",
        "A1",
        "A2"
      ],
      "rows": 1664852,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "errorCov",
      "title": "Estimate Error Covariance Matrix Using GWAS Insignificant Effects",
      "topics": [
        "errorCov"
      ]
    },
    {
      "page": "filter_align",
      "title": "Filter and Align GWAS Data to a Reference Panel",
      "topics": [
        "filter_align"
      ]
    },
    {
      "page": "hapmap3",
      "title": "HapMap3 and UKBB Genotype SNP Data",
      "topics": [
        "hapmap3"
      ]
    },
    {
      "page": "Joint.test",
      "title": "Perform Joint Test on GWAS Summary Data",
      "topics": [
        "Joint.test"
      ]
    },
    {
      "page": "MRBEE.IMRP",
      "title": "Estimate Causal Effect with MRBEE",
      "topics": [
        "MRBEE.IMRP"
      ]
    },
    {
      "page": "MRBEE.IMRP.Egger",
      "title": "Estimate Causal Effect with MRBEE",
      "topics": [
        "MRBEE.IMRP.Egger"
      ]
    },
    {
      "page": "MRBEE.IMRP.UV",
      "title": "Univariable MR Estimation using MRBEE Method",
      "topics": [
        "MRBEE.IMRP.UV"
      ]
    }
  ],
  "_readme": "https://github.com/noahlorinczcomi/MRBEE/raw/HEAD/README.md",
  "_rundeps": [
    "data.table",
    "FDRestimation",
    "lattice",
    "MASS",
    "Matrix",
    "rbibutils",
    "Rdpack"
  ],
  "_score": 3.4313637641589874,
  "_indexed": false,
  "_nocasepkg": "mrbee",
  "_universes": [
    "mrcieu"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-15T10:59:48.000Z",
      "distro": "noble",
      "commit": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
      "fileid": "a3a19d69838e9097dd335f8128abf9e5343fedaf32c223e3119b59fcf1d031e9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/27541296868"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-15T10:59:02.000Z",
      "distro": "noble",
      "commit": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
      "fileid": "cc5b267cec6567760009a491c53f7cf48005966be9ffdf419d7f2af361c87a41",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/27541296868"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-06-15T10:58:33.000Z",
      "commit": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
      "fileid": "1cd0f1c1fdcfdbd4216f78d5f59ca7f689f85215955f81582905f30fdec7fae6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/27541296868"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-06-15T10:58:39.000Z",
      "commit": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
      "fileid": "e745f3ba271b8be342898bd855440dda7770e1a13eff0edb994c520960d3668c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/27541296868"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-06-15T10:58:53.000Z",
      "commit": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
      "fileid": "a6603847838222537bfe207d36c5469d76f6d2ffaf51a658bac6147c25f21cdb",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/27541296868"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-15T10:58:34.000Z",
      "commit": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
      "fileid": "8b3a2d411f72999dc814a32ef67f16fa60bdba9591483c9b621db25388cafd9c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/27541296868"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-15T10:58:22.000Z",
      "commit": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
      "fileid": "c862244c602d5316fcfc8cc184fe6688256c2c65cb93193d24d625d395e2d0e6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/27541296868"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-15T10:58:17.000Z",
      "commit": "07c060cac5e8c831dc3adfa2b9f8b1f4fdb04db3",
      "fileid": "f799512dc87346a98760c210110fbb640adb5c58f2a1efa77312b821a922e3ce",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/27541296868"
    }
  ]
}