{
  "_id": "6a105309acfb0bcc41ca199a",
  "Package": "finemapr",
  "Title": "R wrapper to fine-mappers",
  "Version": "0.1.0",
  "Date": "2018-02-09",
  "Authors@R": "c(person(\"Andrey\", \"Ziyatdinov\", email = \"andrey@example.com\", role = c(\"aut\", \"cre\")))",
  "Maintainer": "Andrey Ziyatdinov <andrey@example.com>",
  "Description": "R wrapper to fine-mappers.",
  "License": "GPL (>= 3)",
  "URL": "https://github.com/variani/finemapr",
  "Remotes": [
    "slowkow/proxysnps"
  ],
  "Collate": "'package.R' 'names.R' 'sumstats.R' 'abf.R' 'cojo.R' 'utils.R'\n'read.R' 'datasets.R' 'files.R' 'plots.R' 'finemap.R'\n'caviar.R' 'paintor.R' 'classMethods.R'\n'classFinemaprPaintor.R' 'classFinemaprFinemap.R'\n'classFinemaprCaviar.R' 'finemapr.R' 'ld.R' 'zzz.R'",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "libx11-dev",
  "Repository": "https://mrcieu.r-universe.dev",
  "Date/Publication": "2026-03-03 12:54:04 UTC",
  "RemoteUrl": "https://github.com/remlapmot/finemapr",
  "RemoteRef": "suggestions-2",
  "RemoteSha": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-09 09:13:42 UTC",
    "User": "root"
  },
  "Author": "Andrey Ziyatdinov [aut, cre]",
  "MD5sum": "b621e1faa1efd51931238a743d2117f7",
  "_user": "mrcieu",
  "_type": "src",
  "_file": "finemapr_0.1.0.tar.gz",
  "_fileid": "5cfe1fbf9041eef5f86ba77559ac24a06d4b90095c9a7ed4b8d71fb8daa2fc33",
  "_filesize": 162939,
  "_sha256": "5cfe1fbf9041eef5f86ba77559ac24a06d4b90095c9a7ed4b8d71fb8daa2fc33",
  "_created": "2026-05-09T09:13:42.000Z",
  "_published": "2026-05-22T12:58:49.046Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77384131827,
      "time": 178,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "6894584567"
    },
    {
      "job": 77384132253,
      "time": 169,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "6894583875"
    },
    {
      "job": 77384131716,
      "time": 125,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "6894585450"
    },
    {
      "job": 77384132126,
      "time": 99,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "6894580026"
    },
    {
      "job": 77384131290,
      "time": 235,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6894568584"
    },
    {
      "job": 77384131300,
      "time": 122,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7161051325"
    },
    {
      "job": 77384131845,
      "time": 130,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "6894580522"
    },
    {
      "job": 77384131816,
      "time": 118,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "6894579507"
    },
    {
      "job": 77384131984,
      "time": 154,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "6894582669"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mrcieu/actions/runs/25597329672",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/remlapmot/finemapr",
  "_commit": {
    "id": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
    "author": "Tom Palmer <remlapmot@hotmail.com>",
    "committer": "Tom Palmer <remlapmot@hotmail.com>",
    "message": "Document\n",
    "time": 1772542444
  },
  "_maintainer": {
    "name": "Andrey Ziyatdinov",
    "email": "andrey@example.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "cowplot",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "proxysnps",
      "role": "Suggests"
    },
    {
      "package": "RCurl",
      "role": "Suggests"
    },
    {
      "package": "gaston",
      "role": "Suggests"
    },
    {
      "package": "rsnps",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "remlapmot",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-25",
      "n": 11
    },
    {
      "week": "2025-31",
      "n": 20
    },
    {
      "week": "2026-10",
      "n": 12
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "variani",
      "count": 82,
      "uuid": 1352632
    },
    {
      "user": "dmitryprok",
      "count": 1,
      "uuid": 18337252
    }
  ],
  "_userbio": {
    "uuid": 15654827,
    "type": "organization",
    "name": "MRC Integrative Epidemiology Unit"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/finemapr"
  },
  "_devurl": "https://github.com/variani/finemapr",
  "_searchresults": 6,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/finemapr.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "abf",
    "cojo",
    "collect_results",
    "example_finemap",
    "extract_credible_set",
    "filename_annot",
    "filename_config",
    "filename_k",
    "filename_ld",
    "filename_log",
    "filename_master",
    "filename_snp",
    "filename_zscore",
    "finemapr",
    "plot_config",
    "plot_ncausal",
    "plot_snp",
    "plot_zscore",
    "process_annot",
    "process_ld",
    "process_n",
    "process_tab",
    "proxysnps_ref_ld",
    "proxysnps_ref_vcf",
    "read_ld",
    "read_zscore",
    "ref_bed",
    "ref_ld",
    "ref_pop",
    "run_caviar",
    "run_cojo",
    "run_finemap",
    "run_paintor",
    "run_tool",
    "sumstats_bmi",
    "write_files"
  ],
  "_help": [
    {
      "page": "abf",
      "title": "abf",
      "topics": [
        "abf"
      ]
    },
    {
      "page": "cojo",
      "title": "Run GCTA-COJO.",
      "topics": [
        "cojo"
      ]
    },
    {
      "page": "FinemaprFinemap",
      "title": "S3 class FinemaprFinemap.",
      "topics": [
        "collect_results.FinemaprFinemap",
        "filename_config.FinemaprFinemap",
        "filename_k.FinemaprFinemap",
        "filename_ld.FinemaprFinemap",
        "filename_log.FinemaprFinemap",
        "filename_master.FinemaprFinemap",
        "filename_snp.FinemaprFinemap",
        "filename_zscore.FinemaprFinemap",
        "FinemaprFinemap",
        "plot.FinemaprFinemap",
        "plot_config.FinemaprFinemap",
        "plot_ncausal.FinemaprFinemap",
        "plot_snp.FinemaprFinemap",
        "print.FinemaprFinemap",
        "run_tool.FinemaprFinemap",
        "write_files.FinemaprFinemap"
      ]
    },
    {
      "page": "FinemaprPaintor",
      "title": "S3 class FinemaprPaintor.",
      "topics": [
        "collect_results.FinemaprPaintor",
        "filename_annot.FinemaprPaintor",
        "filename_ld.FinemaprPaintor",
        "filename_master.FinemaprPaintor",
        "filename_snp.FinemaprPaintor",
        "filename_zscore.FinemaprPaintor",
        "FinemaprPaintor",
        "print.FinemaprPaintor",
        "process_annot.FinemaprPaintor",
        "run_tool.FinemaprPaintor",
        "write_files.FinemaprPaintor"
      ]
    },
    {
      "page": "finemapr-fn",
      "title": "Run FINEMAP.",
      "topics": [
        "finemapr"
      ]
    },
    {
      "page": "FinemaprCaviar",
      "title": "S3 class FinemaprCaviar.",
      "topics": [
        "FinemaprCaviar",
        "plot.FinemaprCaviar",
        "plot_snp.FinemaprCaviar",
        "print.FinemaprCaviar"
      ]
    },
    {
      "page": "finemaprPackage",
      "title": "Package finemapr.",
      "topics": [
        "finemapr-package",
        "finemaprPackage"
      ]
    },
    {
      "page": "Finemapr",
      "title": "S3 class Finemapr.",
      "topics": [
        "extract_credible_set.Finemapr",
        "Finemapr",
        "plot.Finemapr",
        "plot_ncausal",
        "plot_snp.Finemapr",
        "plot_zscore.Finemapr",
        "print.Finemapr",
        "process_ld.Finemapr",
        "process_tab.Finemapr"
      ]
    },
    {
      "page": "proxysnps_ref_ld",
      "title": "https://github.com/slowkow/proxysnps/blob/master/R/get_vcf.R",
      "topics": [
        "proxysnps_ref_ld"
      ]
    },
    {
      "page": "proxysnps_ref_vcf",
      "title": "https://github.com/slowkow/proxysnps/blob/master/R/get_vcf.R",
      "topics": [
        "proxysnps_ref_vcf"
      ]
    },
    {
      "page": "read_ld",
      "title": "Read LD matrix from a file.",
      "topics": [
        "read_ld"
      ]
    },
    {
      "page": "read_zscore",
      "title": "Read z-scores from a file.",
      "topics": [
        "read_zscore"
      ]
    },
    {
      "page": "run_caviar",
      "title": "Run CAVIAR.",
      "topics": [
        "run_caviar"
      ]
    },
    {
      "page": "run_finemap",
      "title": "Run FINEMAP.",
      "topics": [
        "run_finemap"
      ]
    },
    {
      "page": "run_paintor",
      "title": "Run Paintor.",
      "topics": [
        "run_paintor"
      ]
    },
    {
      "page": "sumstats_bmi",
      "title": "https://data.broadinstitute.org/alkesgroup/sumstats_formatted/readme.txt https://github.com/bulik/ldsc/wiki/Partitioned-Heritability",
      "topics": [
        "sumstats_bmi"
      ]
    }
  ],
  "_readme": "https://github.com/remlapmot/finemapr/raw/suggestions-2/README.md",
  "_rundeps": [
    "bit",
    "bit64",
    "cli",
    "clipr",
    "cowplot",
    "cpp11",
    "crayon",
    "data.table",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "ggrepel",
    "glue",
    "gtable",
    "hms",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "readr",
    "rlang",
    "S7",
    "scales",
    "tibble",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "finemapr.Rmd",
      "filename": "finemapr.html",
      "title": "Fine-mapping analysis pipeline by finemapr",
      "author": "Andrey Ziyatdinov",
      "engine": "knitr::rmarkdown",
      "headings": [
        "About finemapr",
        "Tool-independent scheme of analysis workflow",
        "Installation",
        "Load packages",
        "Example data",
        "Explore z-scores",
        "Run tools",
        "Run FINEMAP",
        "Run CAVIAR",
        "Run PAINTOR",
        "Conclusions"
      ],
      "created": "2018-02-19 22:05:21",
      "modified": "2025-08-01 11:05:41",
      "commits": 5
    }
  ],
  "_score": 3.1760912590556813,
  "_indexed": false,
  "_nocasepkg": "finemapr",
  "_universes": [
    "mrcieu"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-09T09:16:22.000Z",
      "distro": "noble",
      "commit": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
      "fileid": "ff351c34b2d91758b28f0d486fbefa03822e0ff495c445767f458a7eff6deae7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/25597329672"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-09T09:16:14.000Z",
      "distro": "noble",
      "commit": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
      "fileid": "5042d4443f8faeda140f7f7df23482647fa872b7651c1bd0ec013b5e14634782",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/25597329672"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-09T09:16:33.000Z",
      "commit": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
      "fileid": "0ca99af438557945bb1bab961548a2e87a30bd48f2f21edb0fdcb5a418737cc6",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/25597329672"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-09T09:15:40.000Z",
      "commit": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
      "fileid": "181b388bbaae59f0deba17099ea30463015f9ee0c9424450ff343d65a0d1b6f1",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/25597329672"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-09T09:15:22.000Z",
      "commit": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
      "fileid": "68103390f559a4945745f3222f44b560ecc33843e14ddc014c67bce5f6465e24",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/25597329672"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-09T09:15:12.000Z",
      "commit": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
      "fileid": "2d0528e1ea14ff5c06b97dbb5398b026a3adff4b0b4957ccccf3508acf81e084",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/25597329672"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-09T09:15:48.000Z",
      "commit": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
      "fileid": "159200f0189800be28616764d89d4f63ba65d742c9348a3acddf193ce738f5b7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/25597329672"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-05-22T12:58:30.000Z",
      "commit": "ccbd6f4dd8c62dfe694914caaf284a6dc53eeb63",
      "fileid": "5e65358873dd95bb8d548daa6ea38b04be5d7fb6dc25acb1797f09bd214950ac",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/25597329672"
    }
  ]
}