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"Title": "Interface to the 'OpenGWAS' Database API",
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"License": "MIT + file LICENSE",
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"ld_matrix",
"ld_matrix_local",
"ld_reflookup",
"legacy_ids",
"logging_info",
"phewas",
"select_api",
"tophits",
"user",
"variants_chrpos",
"variants_gene",
"variants_rsid",
"variants_to_rsid"
],
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"title": "Look up allele frequencies and LD scores for 1000 genomes populations by chrpos",
"topics": [
"afl2_chrpos"
]
},
{
"page": "afl2_list",
"title": "Retrieve a allele frequency and LD scores for pre-defined lists of variants",
"topics": [
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]
},
{
"page": "afl2_rsid",
"title": "Look up allele frequencies and LD scores for 1000 genomes populations by rsid",
"topics": [
"afl2_rsid"
]
},
{
"page": "api_query",
"title": "Wrapper for sending queries and payloads to API",
"topics": [
"api_query"
]
},
{
"page": "api_status",
"title": "OpenGWAS server status",
"topics": [
"api_status"
]
},
{
"page": "associations",
"title": "Query specific variants from specific GWAS",
"topics": [
"associations"
]
},
{
"page": "batch_from_id",
"title": "Extract batch name from study ID",
"topics": [
"batch_from_id"
]
},
{
"page": "batches",
"title": "Get list of data batches in IEU OpenGWAS database",
"topics": [
"batches"
]
},
{
"page": "check_access_token",
"title": "Check if authentication has been made",
"topics": [
"check_access_token"
]
},
{
"page": "check_reset",
"title": "Check if OpenGWAS allowance needs to be reset",
"topics": [
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]
},
{
"page": "editcheck",
"title": "Check datasets that are in process of being uploaded",
"topics": [
"editcheck"
]
},
{
"page": "fill_n",
"title": "Look up sample sizes when meta data is missing from associations",
"topics": [
"fill_n"
]
},
{
"page": "get_opengwas_jwt",
"title": "Retrieve OpenGWAS JSON Web Token from .Renviron file",
"topics": [
"get_opengwas_jwt"
]
},
{
"page": "get_query_content",
"title": "Parse out json response from httr object",
"topics": [
"get_query_content"
]
},
{
"page": "gwasinfo",
"title": "Get list of studies with available GWAS summary statistics through API",
"topics": [
"gwasinfo"
]
},
{
"page": "gwasinfo_files",
"title": "Get list of download URLs for each file associated with a dataset through API",
"topics": [
"gwasinfo_files"
]
},
{
"page": "infer_ancestry",
"title": "Infer ancestry of GWAS dataset by matching against 1000 genomes allele frequencies",
"topics": [
"infer_ancestry"
]
},
{
"page": "ld_clump",
"title": "Perform LD clumping on SNP data",
"topics": [
"ld_clump"
]
},
{
"page": "ld_clump_api",
"title": "Perform clumping on the chosen variants using the API",
"topics": [
"ld_clump_api"
]
},
{
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"title": "Wrapper for clump function using local plink binary and ld reference dataset",
"topics": [
"ld_clump_local"
]
},
{
"page": "ld_matrix",
"title": "Get LD matrix for list of SNPs",
"topics": [
"ld_matrix"
]
},
{
"page": "ld_matrix_local",
"title": "Get LD matrix using local plink binary and reference dataset",
"topics": [
"ld_matrix_local"
]
},
{
"page": "ld_reflookup",
"title": "Check which rsids are present in a remote LD reference panel",
"topics": [
"ld_reflookup"
]
},
{
"page": "legacy_ids",
"title": "Convert current IDs to legacy IDs",
"topics": [
"legacy_ids"
]
},
{
"page": "logging_info",
"title": "Details of how access token logs are used",
"topics": [
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]
},
{
"page": "phewas",
"title": "Perform fast phewas of a specific variants against all available GWAS datasets",
"topics": [
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]
},
{
"page": "print.ApiStatus",
"title": "Print API status",
"topics": [
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]
},
{
"page": "print.GwasInfo",
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{
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]
},
{
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},
{
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]
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]
},
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