{
  "_id": "6a481662e06c18f0a652be57",
  "Package": "proxysnps",
  "Title": "Get proxy SNPs for a SNP in the 1000 Genomes Project",
  "Version": "0.0.1",
  "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", role = c(\"aut\", \"cre\"), email =\n\"kslowikowski@fas.harvard.edu\") )",
  "Description": "This package implements functions to query remote VCF\nfiles. You can use it to find proxy SNPs in linkage\ndisequilibrium with SNPs of interest or to calculate allele\nfrequencies in different populations.",
  "License": "MIT + file LICENSE",
  "LazyData": "true",
  "URL": "https://github.com/slowkow/proxysnps",
  "BugReports": "https://github.com/slowkow/proxysnps/issues",
  "RoxygenNote": "5.0.1",
  "Config/pak/sysreqs": "make",
  "Repository": "https://mrcieu.r-universe.dev",
  "Date/Publication": "2018-05-16 13:31:03 UTC",
  "RemoteUrl": "https://github.com/slowkow/proxysnps",
  "RemoteRef": "HEAD",
  "RemoteSha": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 20:03:15 UTC",
    "User": "root"
  },
  "Author": "Kamil Slowikowski [aut, cre]",
  "Maintainer": "Kamil Slowikowski <kslowikowski@fas.harvard.edu>",
  "_user": "mrcieu",
  "_type": "src",
  "_file": "proxysnps_0.0.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/ae57df2308fd59fd9d8c9d6f350f07faeb64bd9785283f2732afe36603fce639",
  "_filesize": 192672,
  "_sha256": "ae57df2308fd59fd9d8c9d6f350f07faeb64bd9785283f2732afe36603fce639",
  "_expires": "2026-10-11T20:06:56.000Z",
  "_created": "2026-07-03T20:03:15.000Z",
  "_published": "2026-07-03T20:06:58.639Z",
  "_jobs": [
    {
      "job": 85064699333,
      "time": 144,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "8074074487"
    },
    {
      "job": 85064699345,
      "time": 164,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8074078377"
    },
    {
      "job": 85064699323,
      "time": 81,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "8074062976"
    },
    {
      "job": 85064699357,
      "time": 119,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8074069675"
    },
    {
      "job": 85064231638,
      "time": 238,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8074047467"
    },
    {
      "job": 85064699324,
      "time": 182,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8074082040"
    },
    {
      "job": 85064699327,
      "time": 104,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "8074066760"
    },
    {
      "job": 85064699335,
      "time": 107,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "8074067793"
    },
    {
      "job": 85064699347,
      "time": 103,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8074066932"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/mrcieu/actions/runs/28680969614",
  "_status": "success",
  "_upstream": "https://github.com/slowkow/proxysnps",
  "_commit": {
    "id": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
    "author": "Kamil Slowikowski <kslowikowski@gmail.com>",
    "committer": "Kamil Slowikowski <kslowikowski@gmail.com>",
    "message": "change URL again\n\nfixes issue #7\n\nsame issue reported in #5\n\nsome day we need to stop hard-coding this URL...\n",
    "time": 1526477463
  },
  "_maintainer": {
    "name": "Kamil Slowikowski",
    "email": "kslowikowski@fas.harvard.edu",
    "login": "slowkow",
    "bluesky": "@slowkow.com",
    "linkedin": "in/kslowikowski",
    "description": "Computational biologist. Using transcriptomics to learn about inflammation and cancer.",
    "uuid": 209714
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.2.1",
      "role": "Depends"
    },
    {
      "package": "RCurl",
      "role": "Imports"
    },
    {
      "package": "myvariant",
      "role": "Suggests"
    }
  ],
  "_owner": "slowkow",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "bioinformatics",
    "linkage-disequilibrium",
    "snps",
    "statistics"
  ],
  "_stars": 31,
  "_contributors": [
    {
      "user": "slowkow",
      "count": 19,
      "uuid": 209714
    }
  ],
  "_userbio": {
    "uuid": 15654827,
    "type": "organization",
    "name": "MRC Integrative Epidemiology Unit",
    "followers": 250
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/proxysnps"
  },
  "_devurl": "https://github.com/slowkow/proxysnps",
  "_searchresults": 10,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/proxysnps.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "compute_ld",
    "get_proxies",
    "get_vcf"
  ],
  "_datasets": [
    {
      "name": "ind",
      "title": "",
      "object": "ind",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Family.ID",
        "Individual.ID",
        "Paternal.ID",
        "Maternal.ID",
        "Gender",
        "Population",
        "Relationship",
        "Siblings",
        "Second.Order",
        "Third.Order",
        "Other.Comments",
        "SuperPopulation"
      ],
      "rows": 3501,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "compute_ld",
      "title": "Compute two commonly used linkage disequilibrium statistics.",
      "topics": [
        "compute_ld"
      ]
    },
    {
      "page": "get_proxies",
      "title": "Get proxy SNPs for a SNP at a given genomic position.",
      "topics": [
        "get_proxies"
      ]
    },
    {
      "page": "get_vcf",
      "title": "Get data for a genomic region from a remote VCF file.",
      "topics": [
        "get_vcf"
      ]
    }
  ],
  "_readme": "https://github.com/slowkow/proxysnps/raw/HEAD/README.md",
  "_rundeps": [
    "bitops",
    "RCurl"
  ],
  "_score": 3.1903316981702914,
  "_indexed": false,
  "_nocasepkg": "proxysnps",
  "_universes": [
    "mrcieu"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-07-03T20:05:39.000Z",
      "distro": "resolute",
      "commit": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
      "fileid": "https://r2.ropensci.org/30d6eabffb2b78158389fba1b9f86d092bd12c98f05b180382c6f5ba5fcbeda9",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/28680969614"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-07-03T20:05:58.000Z",
      "distro": "resolute",
      "commit": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
      "fileid": "https://r2.ropensci.org/ddd1c68c2f67db1ea723a66739cf5f190a35dd36a237fb5b7c746ff54e3f1831",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/28680969614"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-07-03T20:04:40.000Z",
      "commit": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
      "fileid": "https://r2.ropensci.org/80ecb8b3e0372f9bfc11a43bad67e7aabfb4dbed871ec116535798d7113cfb47",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/28680969614"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-07-03T20:05:12.000Z",
      "commit": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
      "fileid": "https://r2.ropensci.org/9259392fb8ec730f76c80f5d571a225f89a205704cd1d822c19ba0be74a04bb1",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/28680969614"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.1",
      "date": "2026-07-03T20:06:34.000Z",
      "commit": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
      "fileid": "https://r2.ropensci.org/3fe1bf295ac631269970dd4d30c7076dc321b2870e794def2351d814f96acd8b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/28680969614"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-07-03T20:04:54.000Z",
      "commit": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
      "fileid": "https://r2.ropensci.org/4fa71c69841ca64c9ef3a8e27ad850643b7ecf54daa78f90bd785bfef7604871",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/28680969614"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-07-03T20:05:00.000Z",
      "commit": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
      "fileid": "https://r2.ropensci.org/cb68f977a83a149e36eeaf47b475f103c1718a521c525567ae998f613c8fae0f",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/28680969614"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-07-03T20:04:52.000Z",
      "commit": "9a9a3158d5895d2f94ab9d01213e92f8c50bf716",
      "fileid": "https://r2.ropensci.org/de4bbc1f2d321235adefea8ebb076a6e100b3ac9333082f79a9671f27a0699fb",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/mrcieu/actions/runs/28680969614"
    }
  ]
}