Package: MRAID 1.0

Zhongshang Yuan

MRAID: MRAID(Mendelian Randomization with Automated Instrument Determination)

MRAID is an R package for efficient statistical inference of two-sample Mendelian Randomization. MRAID takes GWAS summary statistics as inputs to estimate causal effects of one trait on another. MRAID is able to model an initial set of candidate SNP instruments that are in high LD with each other and perform automated instrument selection to identify suitable SNPs to serve as instrumental variables. MRAID simultaneously accounts for both uncorrelated and correlated horizontal pleiotropy, relies on a scalable sampling-based inference algorithm to perform numerical integration, circumventing the difficulty in likelihood function, leading to calibrated p-values that enable reasonably large-scale exposure screening.

Authors:Zhongshang Yuan and Lu Liu

MRAID_1.0.tar.gz
MRAID_1.0.zip(r-4.7-x86_64)MRAID_1.0.zip(r-4.7-arm64)MRAID_1.0.zip(r-4.6-x86_64)MRAID_1.0.zip(r-4.6-arm64)
MRAID_1.0.tgz(r-4.6-x86_64)MRAID_1.0.tgz(r-4.6-arm64)
MRAID_1.0.tar.gz(r-4.7-arm64)MRAID_1.0.tar.gz(r-4.7-x86_64)MRAID_1.0.tar.gz(r-4.6-arm64)MRAID_1.0.tar.gz(r-4.6-x86_64)
MRAID_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MRAID/json (API)

# Install 'MRAID' in R:
install.packages('MRAID', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yuanzhongshang/mraid/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

openblascpp

3.13 score 16 stars 17 scripts 2 exports 3 dependencies

Last updated from:8769247004. Checks:10 WARNING, 2 OK, 3 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING147
linux-devel-x86_64WARNING110
source / vignettesOK216
linux-release-arm64WARNING106
linux-release-x86_64WARNING117
macos-release-arm64WARNING103
macos-release-x86_64WARNING227
macos-oldrel-arm64FAIL92
macos-oldrel-x86_64FAIL133
windows-devel-arm64WARNING300
windows-devel-x86_64WARNING132
windows-release-arm64WARNING319
windows-release-x86_64WARNING116
windows-oldrel-x86_64FAIL59
wasm-releaseOK119

Exports:MRAIDMRAID_CPP

Dependencies:RcppRcppArmadilloRcppDist