Package: MRAID 1.0

Zhongshang Yuan

MRAID: MRAID(Mendelian Randomization with Automated Instrument Determination)

MRAID is an R package for efficient statistical inference of two-sample Mendelian Randomization. MRAID takes GWAS summary statistics as inputs to estimate causal effects of one trait on another. MRAID is able to model an initial set of candidate SNP instruments that are in high LD with each other and perform automated instrument selection to identify suitable SNPs to serve as instrumental variables. MRAID simultaneously accounts for both uncorrelated and correlated horizontal pleiotropy, relies on a scalable sampling-based inference algorithm to perform numerical integration, circumventing the difficulty in likelihood function, leading to calibrated p-values that enable reasonably large-scale exposure screening.

Authors:Zhongshang Yuan and Lu Liu

MRAID_1.0.tar.gz
MRAID_1.0.zip(r-4.7)MRAID_1.0.zip(r-4.6)MRAID_1.0.zip(r-4.5)
MRAID_1.0.tgz(r-4.6-x86_64)MRAID_1.0.tgz(r-4.6-arm64)MRAID_1.0.tgz(r-4.5-x86_64)MRAID_1.0.tgz(r-4.5-arm64)
MRAID_1.0.tar.gz(r-4.7-arm64)MRAID_1.0.tar.gz(r-4.7-x86_64)MRAID_1.0.tar.gz(r-4.6-arm64)MRAID_1.0.tar.gz(r-4.6-x86_64)
MRAID_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
MRAID/json (API)

# Install 'MRAID' in R:
install.packages('MRAID', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yuanzhongshang/mraid/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

openblascpp

2.94 score 16 stars 11 scripts 2 exports 3 dependencies

Last updated from:8769247004. Checks:8 WARNING, 2 OK, 3 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING117
linux-devel-x86_64WARNING120
source / vignettesOK198
linux-release-arm64WARNING109
linux-release-x86_64WARNING156
macos-release-arm64WARNING114
macos-release-x86_64WARNING328
macos-oldrel-arm64FAIL98
macos-oldrel-x86_64FAIL170
windows-develWARNING242
windows-releaseWARNING101
windows-oldrelFAIL51
wasm-releaseOK106

Exports:MRAIDMRAID_CPP

Dependencies:RcppRcppArmadilloRcppDist