R packages by mrcieu

Rationale and key pointsUpdated 30 days ago

Nicholas Sunderland

Rendered from rationale.Rmd in genepi.utils 0.0.33.

PlottingUpdated 30 days ago

Nicholas Sunderland

Rendered from plotting.Rmd in genepi.utils 0.0.33.

Multiple Imputation DOCtor (midoc)Updated 2 months ago

Elinor Curnow, Jon Heron, Rosie Cornish, Kate Tilling, and James Carpenter

Rendered from midoc.rmd in midoc 1.0.0.

Perform MRUpdated 2 months ago

Gibran Hemani and Philip Haycock

Rendered from perform_mr.Rmd in TwoSampleMR 0.6.8.

MR-SimSS: The algorithmUpdated 2 months ago

Amanda Forde

Rendered from MR-SimSS-algorithm.Rmd in mr.simss 0.1.0.

Deriving MR-SimSSUpdated 2 months ago

Amanda Forde

Rendered from derive-MR-SimSS.Rmd in mr.simss 0.1.0.

Performing MR-SimSSUpdated 2 months ago

Amanda Forde

Rendered from perform-MR-SimSS.Rmd in mr.simss 0.1.0.

Winner's Curse and weak instrument bias in MRUpdated 2 months ago

Amanda Forde

Rendered from wc_wib.Rmd in mr.simss 0.1.0.

Copula SimulationUpdated 2 months ago

Robin J. Evans

Rendered from CopulaSimulation.Rmd in causl 0.9.6.

Harmonise dataUpdated 3 months ago

Gibran Hemani

Rendered from harmonise.Rmd in TwoSampleMR 0.6.8.

Outcome dataUpdated 3 months ago

Gibran Hemani

Rendered from outcome.Rmd in TwoSampleMR 0.6.8.

Nonparametric bounds for the average causal effect: bpbounds examplesUpdated 3 months ago

Tom Palmer, Roland Ramsahai, Vanessa Didelez, Nuala Sheehan

Rendered from bpbounds.Rmd in bpbounds 0.1.6.9000.

Comparison fits of the multiplicative structural mean modelUpdated 3 months ago

Tom Palmer

Rendered from compare-smm-fits.Rmd in OneSampleMR 0.1.5.9000.

Comparison of conditional F-statisticsUpdated 3 months ago

Tom Palmer

Rendered from f-statistic-comparison.Rmd in OneSampleMR 0.1.5.9000.

Multivariable MR TutorialUpdated 3 months ago

Wes Spiller, Eleanor Sanderson, and Jack Bowden

Rendered from MVMR.rmd in MVMR 0.4.

Major changes to the IEU GWAS resources for 2020Updated 3 months ago

Gibran Hemani

Rendered from gwas2020.Rmd in TwoSampleMR 0.6.8.

Discrete Variables CopulaUpdated 4 months ago

Robin J. Evans

Rendered from Discrete_Variables_Copula.Rmd in causl 0.9.6.

Inversion TutorialUpdated 4 months ago

Robin J. Evans

Rendered from Inversion.Rmd in causl 0.9.6.

BWMR Package for causal inference based on summary statisticsUpdated 5 months ago

The package maintainer

Rendered from BWMR_package.Rnw in BWMR 0.1.1.

IntroductionUpdated 7 months ago

Gibran Hemani

Rendered from introduction.Rmd in TwoSampleMR 0.6.8.

Perform fast queries against a massive database of complete GWAS summary dataUpdated 7 months ago

Gibran Hemani

Rendered from guide.Rmd in ieugwasr 1.0.2.

Mendelian randomization vignetteUpdated 7 months ago

Stephen Burgess

Rendered from Vignette_MR.Rmd in MendelianRandomization 0.10.0.

Simulating DataUpdated 8 months ago

Jean Morrison

Rendered from simulating_data.Rmd in GWASBrewer 0.3.0.0214.

GENI plotsUpdated 8 months ago

James R Staley & Wes Spiller

Rendered from geni_plots.Rmd in geni.plots 0.1.2.

ClumpingUpdated 8 months ago

Nicholas Sunderland

Rendered from clumping.Rmd in genepi.utils 0.0.33.

Collider biasUpdated 8 months ago

Nicholas Sunderland

Rendered from collider_bias.Rmd in genepi.utils 0.0.33.

Controlling Effect Size DistributionsUpdated 8 months ago

Jean Morrison

Rendered from effect_distribution.Rmd in GWASBrewer 0.3.0.0214.

Resampling and Re-Scaling Summary and Individual Level DataUpdated 8 months ago

Jean Morrison

Rendered from resampling.Rmd in GWASBrewer 0.3.0.0214.

CHR:POS to RSID mappingUpdated 8 months ago

Nicholas Sunderland

Rendered from chrpos_to_rsid.Rmd in genepi.utils 0.0.33.

LD matrixUpdated 8 months ago

Nicholas Sunderland

Rendered from ld_matrix.Rmd in genepi.utils 0.0.33.

Standardise GWASUpdated 8 months ago

Nicholas Sunderland

Rendered from standardise_gwas.Rmd in genepi.utils 0.0.33.

prop-coloc-vignetteUpdated 8 months ago

Ashish Patel

Rendered from prop-coloc-vignette.Rmd in prop.coloc 1.1.0.

Import to CAMERA from local dataUpdated 8 months ago

Gibran Hemani

Rendered from import-local.Rmd in CAMeRa 0.1.0.

TutorialUpdated 8 months ago

Gibran Hemani

Rendered from tutorial.Rmd in CAMeRa 0.1.0.

Exposure dataUpdated 8 months ago

Gibran Hemani

Rendered from exposure.Rmd in TwoSampleMR 0.6.8.

Running local LD operationsUpdated 9 months ago

Gibran Hemani

Rendered from local_ld.Rmd in ieugwasr 1.0.2.

TutorialUpdated 11 months ago

Noah Lorincz-Comi

Rendered from tutorial.Rmd in simmrd 0.0.0.9000.

Methods for use with discovery and replication GWASsUpdated 12 months ago

Amanda Forde

Rendered from discovery_replication.Rmd in winnerscurse 0.1.1.

Methods for use with discovery GWASUpdated 12 months ago

Amanda Forde

Rendered from winners_curse_methods.Rmd in winnerscurse 0.1.1.

Standard errors and confidence intervals of adjusted estimatesUpdated 12 months ago

Amanda Forde

Rendered from standard_errors_confidence_intervals.Rmd in winnerscurse 0.1.1.

Comparison of MethodsUpdated 12 months ago

Robin J. Evans

Rendered from Comparison.Rmd in causl 0.9.6.

Hidden VariablesUpdated 1 years ago

Robin J. Evans

Rendered from Hidden_Variables.Rmd in causl 0.9.6.

An Introduction to gsmrUpdated 1 years ago

Zhihong Zhu

Rendered from GSMR-intro.Rmd in gsmr2 1.1.1.

An Introduction to gsmrUpdated 1 years ago

Zhihong Zhu

Rendered from GSMR-intro.Rmd in gsmr 1.0.6.

Tutorial 1: How to create a SummarySet and a DataSetUpdated 1 years ago

Rita Rasteiro

Rendered from SummarySet_DataSet.Rmd in gwasglue2 0.0.0.9000.

MRLocus - estimation of gene-to-trait effectsUpdated 1 years ago

Anqi Zhu, Nana Matoba, Jason Stein, Michael Love

Rendered from mrlocus.Rmd in mrlocus 0.0.26.

Tutorial 6: Remap genomic coordinates to a different genome assemblyUpdated 1 years ago

Rita Rasteiro

Rendered from liftover.Rmd in gwasglue2 0.0.0.9000.

Tutorial 4: Meta analysisUpdated 1 years ago

Rita Rasteiro

Rendered from meta.Rmd in gwasglue2 0.0.0.9000.

Tutorial 5: Alternative regional genotype-phenotype map example, with meta-analyses includedUpdated 1 years ago

Rita Rasteiro

Rendered from finemap_coloc2.Rmd in gwasglue2 0.0.0.9000.

StrategyUpdated 1 years ago

Rita Rasteiro

Rendered from Strategy.Rmd in gwasglue2 0.0.0.9000.

Tutorial 2: MR analysisUpdated 1 years ago

Rita Rasteiro

Rendered from mr.Rmd in gwasglue2 0.0.0.9000.

Tutorial 3: Regional genotype-phenotype mapUpdated 1 years ago

Rita Rasteiro

Rendered from finemap_coloc1.Rmd in gwasglue2 0.0.0.9000.

Automating liftoverUpdated 2 years ago

Gibran Hemani

Rendered from liftover.Rmd in GwasDataImport 0.1.2.

EBI upload pipelineUpdated 2 years ago

Gibran Hemani

Rendered from ebi_workflow.Rmd in GwasDataImport 0.1.2.

Edit existing GWAS meta dataUpdated 2 years ago

Gibran Hemani

Rendered from edit.Rmd in GwasDataImport 0.1.2.

Importing datasets into OpenGWASUpdated 2 years ago

Gibran Hemani

Rendered from import_pipeline.Rmd in GwasDataImport 0.1.2.

Looking up chromosome and position for large sets of rs IDsUpdated 2 years ago

Gibran Hemani

Rendered from get_positions.Rmd in GwasDataImport 0.1.2.

Test run for upload systemUpdated 2 years ago

Gibran Hemani

Rendered from testrun.Rmd in GwasDataImport 0.1.2.

Get startedUpdated 2 years ago

Michael Levin

Rendered from get-started.Rmd in mrSampleOverlap 0.1.1.

AboutUpdated 3 years ago

Yi Liu

Rendered from about.Rmd in epigraphdb 0.2.3.

Getting started with EpiGraphDB in RUpdated 3 years ago

Yi Liu

Rendered from getting-started-with-epigraphdb-r.Rmd in epigraphdb 0.2.3.

Meta functionalities of the EpiGraphDB platformUpdated 3 years ago

Yi Liu

Rendered from meta-functionalities.Rmd in epigraphdb 0.2.3.

OptionsUpdated 3 years ago

Yi Liu

Rendered from options.Rmd in epigraphdb 0.2.3.

Using EpiGraphDB APIUpdated 3 years ago

Yi Liu

Rendered from using-epigraphdb-api.Rmd in epigraphdb 0.2.3.

Using EpiGraphDB R packageUpdated 3 years ago

Yi Liu

Rendered from using-epigraphdb-r-package.Rmd in epigraphdb 0.2.3.

SimulationUpdated 3 years ago

Matthew Lyon

Rendered from Simulation.Rmd in varGWASR 1.0.0.

navmix vignetteUpdated 3 years ago

Andrew Grant

Rendered from navmix.Rmd in navmix 0.2.1.

simulationsUpdated 3 years ago

Carlos Cinelli

Rendered from simulations.Rmd in mrsensemakr 0.3.