R packages by mrcieu

Importing datasets into OpenGWAS [NEW WORKFLOW]Updated 4 days ago

Gibran Hemani

Rendered from import_pipeline_new.Rmd in GwasDataImport 0.2.

Importing datasets into OpenGWASUpdated 5 days ago

Gibran Hemani

Rendered from import_pipeline.Rmd in GwasDataImport 0.2.

Rationale and key pointsUpdated 2 months ago

Nicholas Sunderland

Rendered from rationale.Rmd in genepi.utils 0.0.33.

PlottingUpdated 2 months ago

Nicholas Sunderland

Rendered from plotting.Rmd in genepi.utils 0.0.33.

Multiple Imputation DOCtor (midoc)Updated 2 months ago

Elinor Curnow, Jon Heron, Rosie Cornish, Kate Tilling, and James Carpenter

Rendered from midoc.rmd in midoc 1.0.0.

Perform MRUpdated 3 months ago

Gibran Hemani and Philip Haycock

Rendered from perform_mr.Rmd in TwoSampleMR 0.6.8.

MR-SimSS: The algorithmUpdated 3 months ago

Amanda Forde

Rendered from MR-SimSS-algorithm.Rmd in mr.simss 0.1.0.

Deriving MR-SimSSUpdated 3 months ago

Amanda Forde

Rendered from derive-MR-SimSS.Rmd in mr.simss 0.1.0.

Performing MR-SimSSUpdated 3 months ago

Amanda Forde

Rendered from perform-MR-SimSS.Rmd in mr.simss 0.1.0.

Winner's Curse and weak instrument bias in MRUpdated 3 months ago

Amanda Forde

Rendered from wc_wib.Rmd in mr.simss 0.1.0.

Copula SimulationUpdated 3 months ago

Robin J. Evans

Rendered from CopulaSimulation.Rmd in causl 0.9.6.

Harmonise dataUpdated 3 months ago

Gibran Hemani

Rendered from harmonise.Rmd in TwoSampleMR 0.6.8.

Outcome dataUpdated 3 months ago

Gibran Hemani

Rendered from outcome.Rmd in TwoSampleMR 0.6.8.

Nonparametric bounds for the average causal effect: bpbounds examplesUpdated 4 months ago

Tom Palmer, Roland Ramsahai, Vanessa Didelez, Nuala Sheehan

Rendered from bpbounds.Rmd in bpbounds 0.1.6.9000.

Comparison fits of the multiplicative structural mean modelUpdated 4 months ago

Tom Palmer

Rendered from compare-smm-fits.Rmd in OneSampleMR 0.1.5.9000.

Comparison of conditional F-statisticsUpdated 4 months ago

Tom Palmer

Rendered from f-statistic-comparison.Rmd in OneSampleMR 0.1.5.9000.

Multivariable MR TutorialUpdated 4 months ago

Wes Spiller, Eleanor Sanderson, and Jack Bowden

Rendered from MVMR.rmd in MVMR 0.4.

Major changes to the IEU GWAS resources for 2020Updated 4 months ago

Gibran Hemani

Rendered from gwas2020.Rmd in TwoSampleMR 0.6.8.

Discrete Variables CopulaUpdated 4 months ago

Robin J. Evans

Rendered from Discrete_Variables_Copula.Rmd in causl 0.9.6.

Inversion TutorialUpdated 4 months ago

Robin J. Evans

Rendered from Inversion.Rmd in causl 0.9.6.

BWMR Package for causal inference based on summary statisticsUpdated 6 months ago

The package maintainer

Rendered from BWMR_package.Rnw in BWMR 0.1.1.

IntroductionUpdated 8 months ago

Gibran Hemani

Rendered from introduction.Rmd in TwoSampleMR 0.6.8.

Perform fast queries against a massive database of complete GWAS summary dataUpdated 8 months ago

Gibran Hemani

Rendered from guide.Rmd in ieugwasr 1.0.2.

Mendelian randomization vignetteUpdated 8 months ago

Stephen Burgess

Rendered from Vignette_MR.Rmd in MendelianRandomization 0.10.0.

Simulating DataUpdated 8 months ago

Jean Morrison

Rendered from simulating_data.Rmd in GWASBrewer 0.3.0.0214.

GENI plotsUpdated 8 months ago

James R Staley & Wes Spiller

Rendered from geni_plots.Rmd in geni.plots 0.1.2.

ClumpingUpdated 9 months ago

Nicholas Sunderland

Rendered from clumping.Rmd in genepi.utils 0.0.33.

Collider biasUpdated 9 months ago

Nicholas Sunderland

Rendered from collider_bias.Rmd in genepi.utils 0.0.33.

Controlling Effect Size DistributionsUpdated 9 months ago

Jean Morrison

Rendered from effect_distribution.Rmd in GWASBrewer 0.3.0.0214.

Resampling and Re-Scaling Summary and Individual Level DataUpdated 9 months ago

Jean Morrison

Rendered from resampling.Rmd in GWASBrewer 0.3.0.0214.

CHR:POS to RSID mappingUpdated 9 months ago

Nicholas Sunderland

Rendered from chrpos_to_rsid.Rmd in genepi.utils 0.0.33.

LD matrixUpdated 9 months ago

Nicholas Sunderland

Rendered from ld_matrix.Rmd in genepi.utils 0.0.33.

Standardise GWASUpdated 9 months ago

Nicholas Sunderland

Rendered from standardise_gwas.Rmd in genepi.utils 0.0.33.

prop-coloc-vignetteUpdated 9 months ago

Ashish Patel

Rendered from prop-coloc-vignette.Rmd in prop.coloc 1.1.0.

Import to CAMERA from local dataUpdated 9 months ago

Gibran Hemani

Rendered from import-local.Rmd in CAMeRa 0.1.0.

TutorialUpdated 9 months ago

Gibran Hemani

Rendered from tutorial.Rmd in CAMeRa 0.1.0.

Exposure dataUpdated 9 months ago

Gibran Hemani

Rendered from exposure.Rmd in TwoSampleMR 0.6.8.

Running local LD operationsUpdated 9 months ago

Gibran Hemani

Rendered from local_ld.Rmd in ieugwasr 1.0.2.

TutorialUpdated 11 months ago

Noah Lorincz-Comi

Rendered from tutorial.Rmd in simmrd 0.0.0.9000.

Methods for use with discovery and replication GWASsUpdated 1 years ago

Amanda Forde

Rendered from discovery_replication.Rmd in winnerscurse 0.1.1.

Methods for use with discovery GWASUpdated 1 years ago

Amanda Forde

Rendered from winners_curse_methods.Rmd in winnerscurse 0.1.1.

Standard errors and confidence intervals of adjusted estimatesUpdated 1 years ago

Amanda Forde

Rendered from standard_errors_confidence_intervals.Rmd in winnerscurse 0.1.1.

Comparison of MethodsUpdated 1 years ago

Robin J. Evans

Rendered from Comparison.Rmd in causl 0.9.6.

Hidden VariablesUpdated 1 years ago

Robin J. Evans

Rendered from Hidden_Variables.Rmd in causl 0.9.6.

An Introduction to gsmrUpdated 1 years ago

Zhihong Zhu

Rendered from GSMR-intro.Rmd in gsmr2 1.1.1.

An Introduction to gsmrUpdated 1 years ago

Zhihong Zhu

Rendered from GSMR-intro.Rmd in gsmr 1.0.6.

Tutorial 1: How to create a SummarySet and a DataSetUpdated 1 years ago

Rita Rasteiro

Rendered from SummarySet_DataSet.Rmd in gwasglue2 0.0.0.9000.

MRLocus - estimation of gene-to-trait effectsUpdated 1 years ago

Anqi Zhu, Nana Matoba, Jason Stein, Michael Love

Rendered from mrlocus.Rmd in mrlocus 0.0.26.

Tutorial 6: Remap genomic coordinates to a different genome assemblyUpdated 1 years ago

Rita Rasteiro

Rendered from liftover.Rmd in gwasglue2 0.0.0.9000.

Tutorial 4: Meta analysisUpdated 1 years ago

Rita Rasteiro

Rendered from meta.Rmd in gwasglue2 0.0.0.9000.

Tutorial 5: Alternative regional genotype-phenotype map example, with meta-analyses includedUpdated 1 years ago

Rita Rasteiro

Rendered from finemap_coloc2.Rmd in gwasglue2 0.0.0.9000.

StrategyUpdated 1 years ago

Rita Rasteiro

Rendered from Strategy.Rmd in gwasglue2 0.0.0.9000.

Tutorial 2: MR analysisUpdated 1 years ago

Rita Rasteiro

Rendered from mr.Rmd in gwasglue2 0.0.0.9000.

Tutorial 3: Regional genotype-phenotype mapUpdated 1 years ago

Rita Rasteiro

Rendered from finemap_coloc1.Rmd in gwasglue2 0.0.0.9000.

Automating liftoverUpdated 2 years ago

Gibran Hemani

Rendered from liftover.Rmd in GwasDataImport 0.2.

EBI upload pipelineUpdated 2 years ago

Gibran Hemani

Rendered from ebi_workflow.Rmd in GwasDataImport 0.2.

Edit existing GWAS meta dataUpdated 2 years ago

Gibran Hemani

Rendered from edit.Rmd in GwasDataImport 0.2.

Looking up chromosome and position for large sets of rs IDsUpdated 2 years ago

Gibran Hemani

Rendered from get_positions.Rmd in GwasDataImport 0.2.

Test run for upload systemUpdated 2 years ago

Gibran Hemani

Rendered from testrun.Rmd in GwasDataImport 0.2.

Get startedUpdated 2 years ago

Michael Levin

Rendered from get-started.Rmd in mrSampleOverlap 0.1.1.

AboutUpdated 3 years ago

Yi Liu

Rendered from about.Rmd in epigraphdb 0.2.3.

Getting started with EpiGraphDB in RUpdated 3 years ago

Yi Liu

Rendered from getting-started-with-epigraphdb-r.Rmd in epigraphdb 0.2.3.

Meta functionalities of the EpiGraphDB platformUpdated 3 years ago

Yi Liu

Rendered from meta-functionalities.Rmd in epigraphdb 0.2.3.

OptionsUpdated 3 years ago

Yi Liu

Rendered from options.Rmd in epigraphdb 0.2.3.

Using EpiGraphDB APIUpdated 3 years ago

Yi Liu

Rendered from using-epigraphdb-api.Rmd in epigraphdb 0.2.3.

Using EpiGraphDB R packageUpdated 3 years ago

Yi Liu

Rendered from using-epigraphdb-r-package.Rmd in epigraphdb 0.2.3.

SimulationUpdated 3 years ago

Matthew Lyon

Rendered from Simulation.Rmd in varGWASR 1.0.0.

navmix vignetteUpdated 3 years ago

Andrew Grant

Rendered from navmix.Rmd in navmix 0.2.1.

simulationsUpdated 3 years ago

Carlos Cinelli

Rendered from simulations.Rmd in mrsensemakr 0.3.