Nonparametric bounds for the average causal effect: bpbounds examplesUpdated 10 days ago

Tom Palmer, Roland Ramsahai, Vanessa Didelez, Nuala Sheehan

Rendered from bpbounds.Rmd in bpbounds 0.1.7.
Estimating phenotypic correlationsUpdated 19 days ago

Tom Palmer

Rendered from estimating-phenotypic-correlations.rmd in MVMR 0.4.6.
Multivariable MR TutorialUpdated 19 days ago

Wes Spiller, Eleanor Sanderson, and Jack Bowden

Rendered from MVMR.rmd in MVMR 0.4.6.
Exposure dataUpdated 19 days ago

Gibran Hemani

Rendered from exposure.Rmd in TwoSampleMR 0.7.6.
IntroductionUpdated 19 days ago

Gibran Hemani

Rendered from introduction.Rmd in TwoSampleMR 0.7.6.
Perform fast queries against a massive database of complete GWAS summary dataUpdated 19 days ago

Gibran Hemani

Rendered from guide.Rmd in ieugwasr 1.1.0.9000.
Using gpmaprUpdated 21 days ago

Gibran Hemani

Rendered from gpmapr.Rmd in gpmapr 0.0.1.0.
Generate QC ReportUpdated 23 days ago

David Hughes

Rendered from generate_report.Rmd in omiprep 1.0.0.
Import Metabolon Metabolomic DataUpdated 23 days ago

David Hughes

Rendered from metabolon.Rmd in omiprep 1.0.0.
Import Nightingale Metabolomic DataUpdated 23 days ago

David Hughes

Rendered from nightingale.Rmd in omiprep 1.0.0.
Import Olink Proteomic DataUpdated 23 days ago

David Hughes

Rendered from olink.Rmd in omiprep 1.0.0.
Import Somalogic Proteomic DataUpdated 23 days ago

David Hughes

Rendered from somalogic.Rmd in omiprep 1.0.0.
quality_controlUpdated 23 days ago

David Hughes

Rendered from quality_control.Rmd in omiprep 1.0.0.
Skewness-Based Feature QCUpdated 23 days ago

David Hughes

Rendered from skewness_qc.Rmd in omiprep 1.0.0.
Major changes to the IEU GWAS resources for 2020Updated 30 days ago

Gibran Hemani

Rendered from gwas2020.Rmd in TwoSampleMR 0.7.6.
Outcome dataUpdated 30 days ago

Gibran Hemani

Rendered from outcome.Rmd in TwoSampleMR 0.7.6.
TutorialUpdated 1 months ago

Noah Lorincz-Comi

Rendered from tutorial.Rmd in simmrd 0.0.1.
Performing MR-SimSSUpdated 1 months ago

Amanda Forde

Rendered from perform-MR-SimSS.Rmd in mr.simss 0.1.0.
Export DataUpdated 2 months ago

David Hughes

Rendered from export.Rmd in omiprep 1.0.0.
Feature summaryUpdated 2 months ago

David Hughes

Rendered from feature_summary.Rmd in omiprep 1.0.0.
Sample summaryUpdated 2 months ago

David Hughes

Rendered from sample_summary.Rmd in omiprep 1.0.0.
Batch NormaliseUpdated 2 months ago

David Hughes

Rendered from batch_normalise.Rmd in omiprep 1.0.0.
GPMap tutorial: Haemoglobin concentration case studyUpdated 2 months ago

Gibran Hemani

Rendered from tutorial-case-study.Rmd in gpmapr 0.0.1.0.
Perform MRUpdated 2 months ago

Gibran Hemani and Philip Haycock

Rendered from perform_mr.Rmd in TwoSampleMR 0.7.6.
GPMap tutorial: GWAS uploadUpdated 2 months ago

Gibran Hemani

Rendered from tutorial-gwas-upload.Rmd in gpmapr 0.0.1.0.
prop-coloc-vignetteUpdated 2 months ago

Ashish Patel

Rendered from prop-coloc-vignette.Rmd in prop.coloc 2.0.0.
Multiple Imputation DOCtor (midoc)Updated 3 months ago

Elinor Curnow, Jon Heron, Rosie Cornish, Kate Tilling, and James Carpenter

Rendered from midoc.rmd in midoc 1.0.0.9000.
Package 'CIVMR'Updated 3 months ago

Lai Jiang

Rendered from CIVMR.Rmd in CIVMR 0.0.1.
Choosing Instrumental Variables tutorialUpdated 3 months ago

Gibran Hemani

Rendered from tutorial-choosing-ivs.Rmd in gpmapr 0.0.1.0.
Index of suspicion tutorialUpdated 3 months ago

Gibran Hemani

Rendered from tutorial-ios.Rmd in gpmapr 0.0.1.0.
Tissue stratification tutorialUpdated 3 months ago

Gibran Hemani

Rendered from tutorial-tissue-stratification.Rmd in gpmapr 0.0.1.0.
Trait clustering tutorialUpdated 3 months ago

Gibran Hemani

Rendered from tutorial-trait-clustering.Rmd in gpmapr 0.0.1.0.
Trait comparison tutorialUpdated 3 months ago

Gibran Hemani

Rendered from tutorial-trait-comparison.Rmd in gpmapr 0.0.1.0.
Comparison of conditional F-statisticsUpdated 3 months ago

Tom Palmer

Rendered from f-statistic-comparison.Rmd in OneSampleMR 0.1.7.9000.
Importing datasets into OpenGWASUpdated 4 months ago

Gibran Hemani

Rendered from import_pipeline.Rmd in GwasDataImport 0.2.1.
Importing datasets into OpenGWAS [DEPRECATED]Updated 4 months ago

Gibran Hemani

Rendered from import_pipeline_deprecated.Rmd in GwasDataImport 0.2.1.
simulationsUpdated 4 months ago

Carlos Cinelli

Rendered from simulations.Rmd in mrsensemakr 0.3.0.
Installation Updated 4 months ago

Matthew Lee

Rendered from install.Rmd in EpiViz 0.2.0.
Creating plots Updated 4 months ago

Matthew Lee

Rendered from plot.Rmd in EpiViz 0.2.0.
Extras Updated 4 months ago

Matthew Lee

Rendered from extra.Rmd in EpiViz 0.2.0.
AboutUpdated 4 months ago

Matthew Lee

Rendered from about.Rmd in EpiViz 0.2.0.
Triangulation example: Beta-carotene and CHDUpdated 5 months ago

Chin Yang Shapland

Rendered from beta-carotene-chd-example.Rmd in triangulate 0.0.2.
Import Nightingale Metabolomic DataUpdated 6 months ago

David Hughes

Rendered from nightingale.Rmd in metaboprep 1.0.1.
Absolute direction of bias/indirectnessUpdated 6 months ago

Chin Yang Shapland

Rendered from absolute_direction.Rmd in triangulate 0.0.2.
Adding additional levels of bias and indirectnessUpdated 6 months ago

Chin Yang Shapland

Rendered from additional-levels-of-bias-and-indirectness.Rmd in triangulate 0.0.2.
Creating triangulation datasetsUpdated 6 months ago

Chin Yang Shapland

Rendered from Creating-triangulation-datasets.Rmd in triangulate 0.0.2.
Interactive Sensitivity AnalysisUpdated 6 months ago

Chin Yang Shapland

Rendered from interactive-sensitivity.Rmd in triangulate 0.0.2.
Sensitivity Analyses in TriangulateUpdated 6 months ago

Chin Yang Shapland

Rendered from sensitivity-analysis.Rmd in triangulate 0.0.2.
Import Somalogic Proteomic DataUpdated 7 months ago

David Hughes

Rendered from somalogic.Rmd in metaboprep 1.0.1.
Sample summaryUpdated 7 months ago

David Hughes

Rendered from sample_summary.Rmd in metaboprep 1.0.1.
Feature summaryUpdated 7 months ago

David Hughes

Rendered from feature_summary.Rmd in metaboprep 1.0.1.
Generate QC ReportUpdated 7 months ago

David Hughes

Rendered from generate_report.Rmd in metaboprep 1.0.1.
Import Metabolon Metabolomic DataUpdated 7 months ago

David Hughes

Rendered from metabolon.Rmd in metaboprep 1.0.1.
Batch NormaliseUpdated 7 months ago

David Hughes

Rendered from batch_normalise.Rmd in metaboprep 1.0.1.
Export DataUpdated 7 months ago

David Hughes

Rendered from export.Rmd in metaboprep 1.0.1.
Import Olink Proteomic DataUpdated 7 months ago

David Hughes

Rendered from olink.Rmd in metaboprep 1.0.1.
MR-SimSS: The algorithmUpdated 9 months ago

Amanda Forde

Rendered from MR-SimSS-algorithm.Rmd in mr.simss 0.1.0.
quality_controlUpdated 9 months ago

David Hughes

Rendered from quality_control.Rmd in metaboprep 1.0.1.
Comparison of MethodsUpdated 9 months ago

Robin J. Evans

Rendered from Comparison.Rmd in causl 0.10.4.9000.
Copula SimulationUpdated 9 months ago

Robin J. Evans

Rendered from CopulaSimulation.Rmd in causl 0.10.4.9000.
Custom FamiliesUpdated 9 months ago

Robin Evans

Rendered from CustomFamilies.Rmd in causl 0.10.4.9000.
Families, link functions and parametersUpdated 9 months ago

Robin Evans

Rendered from Families.Rmd in causl 0.10.4.9000.
Heterogeneous TEsUpdated 9 months ago

Robin Evans

Rendered from HTEs.Rmd in causl 0.10.4.9000.
Plasmode SimulationUpdated 9 months ago

Robin Evans

Rendered from Plasmode.Rmd in causl 0.10.4.9000.
Inversion TutorialUpdated 9 months ago

Chase Mathis

Rendered from PowerCalculations.Rmd in causl 0.10.4.9000.
Specifying Copula Models through CorrelationUpdated 9 months ago

Chase Mathis

Rendered from Simple-Copula-Parametrization.Rmd in causl 0.10.4.9000.
Harmonise dataUpdated 9 months ago

Gibran Hemani

Rendered from harmonise.Rmd in TwoSampleMR 0.7.6.
Fine-mapping analysis pipeline by finemaprUpdated 10 months ago

Andrey Ziyatdinov

Rendered from finemapr.Rmd in finemapr 0.1.0.
Mendelian randomizationUpdated 10 months ago

Gibran Hemani

Rendered from mr.Rmd in gwasglue 0.0.0.9001.
Generate LD matricesUpdated 10 months ago

Gibran Hemani

Rendered from ld_ref.Rmd in gwasglue 0.0.0.9001.
Genetic colocalisationUpdated 10 months ago

Gibran Hemani

Rendered from colocalisation.Rmd in gwasglue 0.0.0.9001.
Reading, querying and writing GWAS summary data in VCF formatUpdated 12 months ago

Gibran Hemani

Rendered from guide.Rmd in gwasvcf 0.1.6.
Running local LD operationsUpdated 1 years ago

Gibran Hemani

Rendered from local_ld.Rmd in ieugwasr 1.1.0.9000.
Rationale and key pointsUpdated 2 years ago

Nicholas Sunderland

Rendered from rationale.Rmd in genepi.utils 0.1.8.
PlottingUpdated 2 years ago

Nicholas Sunderland

Rendered from plotting.Rmd in genepi.utils 0.1.8.
Winner's Curse and weak instrument bias in MRUpdated 2 years ago

Amanda Forde

Rendered from wc_wib.Rmd in mr.simss 0.1.0.
Comparison fits of the multiplicative structural mean modelUpdated 2 years ago

Tom Palmer

Rendered from compare-smm-fits.Rmd in OneSampleMR 0.1.7.9000.
Discrete Variables CopulaUpdated 2 years ago

Robin J. Evans

Rendered from Discrete_Variables_Copula.Rmd in causl 0.10.4.9000.
Inversion TutorialUpdated 2 years ago

Robin J. Evans

Rendered from Inversion.Rmd in causl 0.10.4.9000.
Negative control example: HDL->CADUpdated 2 years ago

Wenmin Zhang

Rendered from HDL_CAD.Rmd in MRCorge 0.1.0.
BWMR Package for causal inference based on summary statisticsUpdated 2 years ago

Jia Zhao

Rendered from BWMR_package.Rnw in BWMR 0.1.1.
Mendelian randomization vignetteUpdated 2 years ago

Stephen Burgess

Rendered from Vignette_MR.Rmd in MendelianRandomization 0.10.0.
Simulating DataUpdated 2 years ago

Jean Morrison

Rendered from simulating_data.Rmd in GWASBrewer 0.3.0.0238.
GENI plotsUpdated 2 years ago

James R Staley & Wes Spiller

Rendered from geni_plots.Rmd in geni.plots 0.1.2.
ClumpingUpdated 2 years ago

Nicholas Sunderland

Rendered from clumping.Rmd in genepi.utils 0.1.8.
Collider biasUpdated 2 years ago

Nicholas Sunderland

Rendered from collider_bias.Rmd in genepi.utils 0.1.8.
Controlling Effect Size DistributionsUpdated 2 years ago

Jean Morrison

Rendered from effect_distribution.Rmd in GWASBrewer 0.3.0.0238.
Resampling and Re-Scaling Summary and Individual Level DataUpdated 2 years ago

Jean Morrison

Rendered from resampling.Rmd in GWASBrewer 0.3.0.0238.
CHR:POS to RSID mappingUpdated 2 years ago

Nicholas Sunderland

Rendered from chrpos_to_rsid.Rmd in genepi.utils 0.1.8.
LD matrixUpdated 2 years ago

Nicholas Sunderland

Rendered from ld_matrix.Rmd in genepi.utils 0.1.8.
Standardise GWASUpdated 2 years ago

Nicholas Sunderland

Rendered from standardise_gwas.Rmd in genepi.utils 0.1.8.
Import to CAMERA from local dataUpdated 2 years ago

Gibran Hemani

Rendered from import-local.Rmd in CAMeRa 0.1.0.
TutorialUpdated 2 years ago

Gibran Hemani

Rendered from tutorial.Rmd in CAMeRa 0.1.0.
Hidden VariablesUpdated 3 years ago

Robin J. Evans

Rendered from Hidden_Variables.Rmd in causl 0.10.4.9000.
Data with outliersUpdated 3 years ago

Henning Redestig

Rendered from outliers.Rnw in pcaMethods 1.93.0.
IntroductionUpdated 3 years ago

Henning Redestig

Rendered from pcaMethods.Rnw in pcaMethods 1.93.0.
An Introduction to gsmrUpdated 3 years ago

Zhihong Zhu

Rendered from GSMR-intro.Rmd in gsmr2 1.1.1.
An Introduction to gsmrUpdated 3 years ago

Zhihong Zhu

Rendered from GSMR-intro.Rmd in gsmr 1.0.6.
Tutorial 1: How to create a SummarySet and a DataSetUpdated 3 years ago

Rita Rasteiro

Rendered from SummarySet_DataSet.Rmd in gwasglue2 0.0.0.9000.
MRLocus - estimation of gene-to-trait effectsUpdated 3 years ago

Anqi Zhu, Nana Matoba, Jason Stein, Michael Love

Rendered from mrlocus.Rmd in mrlocus 0.0.26.
Tutorial 6: Remap genomic coordinates to a different genome assemblyUpdated 3 years ago

Rita Rasteiro

Rendered from liftover.Rmd in gwasglue2 0.0.0.9000.
Tutorial 4: Meta analysisUpdated 3 years ago

Rita Rasteiro

Rendered from meta.Rmd in gwasglue2 0.0.0.9000.
Tutorial 5: Alternative regional genotype-phenotype map example, with meta-analyses includedUpdated 3 years ago

Rita Rasteiro

Rendered from finemap_coloc2.Rmd in gwasglue2 0.0.0.9000.
StrategyUpdated 3 years ago

Rita Rasteiro

Rendered from Strategy.Rmd in gwasglue2 0.0.0.9000.
Tutorial 2: MR analysisUpdated 3 years ago

Rita Rasteiro

Rendered from mr.Rmd in gwasglue2 0.0.0.9000.
Tutorial 3: Regional genotype-phenotype mapUpdated 3 years ago

Rita Rasteiro

Rendered from finemap_coloc1.Rmd in gwasglue2 0.0.0.9000.
rsnps tutorialUpdated 3 years ago

Julia Gustavsen

Rendered from rsnps.Rmd in rsnps 0.6.1.
Introduction to robvis, a visualization tool for risk-of-bias assessmentsUpdated 3 years ago

Luke A McGuinness

Rendered from Introduction_to_robvis.Rmd in robvis 0.3.0.900.
Getting started with gwasrapiddUpdated 3 years ago

Ramiro Magno

Rendered from gwasrapidd.Rmd in gwasrapidd 0.99.18.
Automating liftoverUpdated 3 years ago

Gibran Hemani

Rendered from liftover.Rmd in GwasDataImport 0.2.1.
EBI upload pipelineUpdated 3 years ago

Gibran Hemani

Rendered from ebi_workflow.Rmd in GwasDataImport 0.2.1.
Edit existing GWAS meta dataUpdated 3 years ago

Gibran Hemani

Rendered from edit.Rmd in GwasDataImport 0.2.1.
Looking up chromosome and position for large sets of rs IDsUpdated 3 years ago

Gibran Hemani

Rendered from get_positions.Rmd in GwasDataImport 0.2.1.
Test run for upload systemUpdated 3 years ago

Gibran Hemani

Rendered from testrun.Rmd in GwasDataImport 0.2.1.
Frequently asked questionsUpdated 3 years ago

Ramiro Magno

Rendered from faq.Rmd in gwasrapidd 0.99.18.
Variants associated with Body Mass Index (BMI)Updated 3 years ago

Ramiro Magno

Rendered from bmi_variants.Rmd in gwasrapidd 0.99.18.
Get startedUpdated 4 years ago

Michael Levin

Rendered from get-started.Rmd in mrSampleOverlap 0.1.1.
AboutUpdated 4 years ago

Yi Liu

Rendered from about.Rmd in epigraphdb 0.2.3.
Getting started with EpiGraphDB in RUpdated 4 years ago

Yi Liu

Rendered from getting-started-with-epigraphdb-r.Rmd in epigraphdb 0.2.3.
Meta functionalities of the EpiGraphDB platformUpdated 4 years ago

Yi Liu

Rendered from meta-functionalities.Rmd in epigraphdb 0.2.3.
OptionsUpdated 4 years ago

Yi Liu

Rendered from options.Rmd in epigraphdb 0.2.3.
Using EpiGraphDB APIUpdated 4 years ago

Yi Liu

Rendered from using-epigraphdb-api.Rmd in epigraphdb 0.2.3.
Using EpiGraphDB R packageUpdated 4 years ago

Yi Liu

Rendered from using-epigraphdb-r-package.Rmd in epigraphdb 0.2.3.
SimulationUpdated 5 years ago

Matthew Lyon

Rendered from Simulation.Rmd in varGWASR 1.0.0.
navmix vignetteUpdated 5 years ago

Andrew Grant

Rendered from navmix.Rmd in navmix 0.2.1.
Clumping and finemappingUpdated 5 years ago

Gibran Hemani

Rendered from finemapping.Rmd in gwasglue 0.0.0.9001.
Finemapping experimentsUpdated 5 years ago

Gibran Hemani

Rendered from finemapping_experiment.Rmd in gwasglue 0.0.0.9001.
Conditional analysis of VCF filesUpdated 6 years ago

Gibran Hemani

Rendered from cojo.Rmd in gwasglue 0.0.0.9001.
MRToolUpdated 6 years ago

Anne-Sophie Kieslinger

Rendered from MRToolVignette.Rmd in MRTool 0.0.0.9000.
Major changes to the IEU GWAS resources for 2020Updated 6 years ago

Gibran Hemani

Rendered from gwas2020.Rmd in gwasglue 0.0.0.9001.
Missing value imputationUpdated 14 years ago

Henning Redestig

Rendered from missingValues.Rnw in pcaMethods 1.93.0.