- aciccomp2016::input_2016Input Data for the 2016 ACIC Competition
- aciccomp2016::parameters_2016Parameters Data for the 2016 ACIC Competition
- alspac::currentCurrent data
- BESIDEMR::AMD_HDLEffect of HDL choesterol on age-related macular degeneration (AMD)
- BWMR::ExampleDataExample Mendelian randomization genotype summary level dataset
- CheckSumStats::ara_test_datA example dataset of genetic summary data for arachidonic acid
- CheckSumStats::charge_top_hitsGWAS top hits for arachidonic acid in the CHARGE consortium
- CheckSumStats::charge_top_hits_cleanedGWAS top hits for arachidonic acid in the CHARGE consortium after post-GWAS cleaning
- CheckSumStats::glioma_test_datA example dataset of genetic summary data
- CheckSumStats::refdat_1000G_superpopsA dataset of reference allele frequencies from 1000 genomes superpopulations
- CIVMR::ADNIADNI Data.
- CIVMR::simulationsimulation Data.
- ColliderBias::testDataSample simulated genome-wide association study (GWAS) summary statisitcs for analysis.
- EpiViz::EpiViz_data1Example data: Simulated epidemiology results for track 1
- EpiViz::EpiViz_data2Example data: Simulated epidemiology results for track 2
- EpiViz::EpiViz_data3Example data: Simulated epidemiology results for track 3
- gassocplot::genes
- gassocplot::genetic_map
- gassocplot::test_assoc_plot
- gassocplot::test_corr
- gassocplot::test_stack_assoc_plot_associations
- gassocplot::test_stack_assoc_plot_markers
- gassocplot2::genes_b37
- gassocplot2::genes_b38
- gassocplot2::genetic_map_b37
- gassocplot2::genetic_map_b38
- gassocplot2::test_assoc_plot
- gassocplot2::test_corr
- gassocplot2::test_stack_assoc_plot_associations
- gassocplot2::test_stack_assoc_plot_markers
- geni.plots::genes_pos_b37
- geni.plots::genes_pos_b38
- geni.plots::geni_test_manhattanGENI plots test data for the Manhattan plot
- geni.plots::geni_test_phewasGENI plots test data for the PheWAS plot
- geni.plots::geni_test_regionGENI plots test data for the regional plot
- geni.plots::geni_test_stack_regionGENI plots test data for the stacked regional plot
- geni.plots::recomb_b37
- geni.plots::recomb_b38
- gsmr::gsmr_data
- gsmr::ldrho
- gsmr::snp_coeff
- gsmr::snp_coeff_id
- gsmr2::gsmr_data
- gsmr2::ldrho
- gsmr2::snp_coeff
- gsmr2::snp_coeff_id
- GWASBrewer::AFExample allele frequencies
- GWASBrewer::ld_mat_listExample LD block matrices
- GWASBrewer::snpdataExample SNP data
- GwasDataImport::build_ref
- GwasDataImport::mart36
- GwasDataImport::mart37
- GwasDataImport::mart38
- gwasrapidd::associations_ex01gwasrapidd entities' examples
- gwasrapidd::associations_ex02gwasrapidd entities' examples
- gwasrapidd::cytogenetic_bandsGRCh38 human cytogenetic bands.
- gwasrapidd::studies_ex01gwasrapidd entities' examples
- gwasrapidd::studies_ex02gwasrapidd entities' examples
- gwasrapidd::traits_ex01gwasrapidd entities' examples
- gwasrapidd::traits_ex02gwasrapidd entities' examples
- gwasrapidd::variants_ex01gwasrapidd entities' examples
- gwasrapidd::variants_ex02gwasrapidd entities' examples
- hapsim::ACEdataACE data set
- hdi::riboflavinRiboflavin data set
- indexevent::testDataSimulated effects on incidence and prognosis
- ivmodel::card.dataCard (1995) Data
- ivmodel::icu.dataPseudo-data based on Branson and Keele (2020)
- locuscomparer::configExample dataset
- midoc::adrAdministrative data
- midoc::asrdsAdapted Self-Report Delinquency Scale data
- midoc::bmiChild body mass index data
- midoc::qolRandomised controlled trial data
- mr.divw::bmi.cadEffect of Body Mass Index (BMI) on Coronary Artery Disease (CAD)
- mr.divw::hdl_subfractionsEffects of HDL subfractions on Coronary Artery Disease (CAD)
- mr.pivw::Bx_expExample data
- mr.pivw::Bxse_expExample data
- mr.pivw::By_expExample data
- mr.pivw::Byse_expExample data
- mr.raps::bmi.aisEffect of Body Mass Index (BMI) on Acute Ischemic Stroke (AIS)
- mr.raps::bmi.bmi"Effect" of Body Mass Index (BMI) on Body Mass Index (BMI)
- mr.raps::bmi.cadEffect of Body Mass Index (BMI) on Coronary Artery Disease (CAD)
- mr.raps::bmi.sbpEffect of Body Mass Index (BMI) on Systolic Blood Pressure (SBP)
- mr.raps::cad.bmiEffect of Coronary Artery Disease (CAD) on Body Mass Index (BMI) (To study reverse causality)
- mr.raps::cad.cadEffect of Coronary Artery Disease (BMI) on Coronary Artery Disease (CAD)
- mr.raps::crp.cadEffect of C-Reactive Protein on Coronary Artery Disease (CAD)
- mr.raps::lipid.cadEffect of blood lipids (LDL cholesterol, HDL cholesterol, Triglycerides) on Cardiovascular disease risk
- MRAPSS::C
- MRAPSS::MHC.SNPs
- MRAPSS::MRdat
- MRAPSS::Omega
- MRAPSS::w_hm3.snplist
- mrbayes::bmi_insulinDataset from Richmond et al. 2017 investigating the association of BMI on insulin resistance
- mrbayes::dodataDataset from Do et al., Nat Gen, 2013 containing summary level data on associations of genotypes with lipid traits and the risk of coronary heart diseases
- MRBEE::hapmap3HapMap3 and UKBB Genotype SNP Data
- MRchecks::test_data
- mrclust::DBP_CADGenetic association data from diastolic blood pressure (DBP) and coronary artery disease (CAD) GWAS.
- mrclust::PP_CADGenetic association data from pulse pressure (PP) and coronary artery disease (CAD) GWAS.
- mrclust::SBP_CADGenetic association data from systolic blood pressure (SBP) and coronary artery disease (CAD) GWAS.
- MRcML::T2D_FG
- MRCorge::Alcohol_CAD
- MRCorge::BMI_CAD
- MRCorge::HDL_CAD
- MRCorge::Height_CognitivePerformance
- MRCorge::IGF1_Height
- MRCorge::LDL_CAD
- MRCorge::Urate_Gout
- MRCorge::VitaminD_CAD
- MrDAG::LBT2MD_dataMrDAG data set: Lifestyle and behavioural exposures that might impact mental health phenotypes
- MrDAG::MD2LBT_dataMrDAG data set: Mental health phenotypes that might impact lifestyle and behavioural traits
- MRInstruments::aries_mqtlData frame of mQTLs from ARIES study
- MRInstruments::blueprint_monocyte_eqtlData frame of eQTLs (monocyte cells) from the BLUEPRINT study
- MRInstruments::drug_interactionsDrug interactions
- MRInstruments::gene_trialsDrug trial information regarding target genes
- MRInstruments::gtex_eqtlData frame of cis-eQTLs from GTEx study (version 6p)
- MRInstruments::gwas_catalogData frame of GWAS significant SNPs obtained from the EBI GWAS catalog
- MRInstruments::metab_qtlsData frame of QTLs of metabolites
- MRInstruments::mrbase_instrumentsData frame of GWAS significant SNPs obtained from the EBI GWAS catalog
- MRInstruments::proteomic_qtlsData frame of proteomic QTLs from Deming et al 2016
- MRMix::BMI15
- MRMix::MDD18
- MRMix::sumstats
- MRMix::sumstats_std
- MRPATH::bmi_t2dEffect of Body Mass Index (BMI) on Type-2 Diabetes (T2D)
- MRPATH::hdl_chdEffect of HDL Cholesterol (HDL-C) on Coronary Heart Disease (CHD)
- MRPC::data_examplesExample data under simple and complex models
- MRPC::data_GEUVADISGEUVADIS data with 62 eQTL-gene sets
- MRPC::data_GEUVADIS_combinedCombined genotype and gene expression data from 62 eQTL-gene sets in 373 Europeans from GEUVADIS
- MRPC::data_with_outliersExample data with outliers
- MRPC::data_without_outliersExample data without outliers
- MRPC::MRPCtruthGraphs used as truth in simulation
- MRPC::simu_data_layeredData for the layered model
- MRPC::simu_data_M0Data for Model 0
- MRPC::simu_data_M1Data for Model 1
- MRPC::simu_data_M2Data for Model 2
- MRPC::simu_data_M3Data for Model 3
- MRPC::simu_data_M4Data for Model 4
- MRPC::simu_data_multiparentData for the multiple-parent model
- MRPC::simu_data_starshapedData for the star model
- MRPRESSO::SummaryStatsSimulated toy dataset
- mrsensemakr::sim_dataSimulated Data for MR Sensitivity Analysis
- MVMR::rawdat_mvmrRaw multivariable MR summary data using lipid fractions as exposures and systolic blood pressure as an outcome.
- MVMR.CUE::gamma1Example MVMR Summary Statistics
- MVMR.CUE::Gamma2Example MVMR Summary Statistics
- MVMR.CUE::se1Example MVMR Summary Statistics
- MVMR.CUE::se2Example MVMR Summary Statistics
- MVMRcMLSuSiE::example.dat
- pcaMethods::helixA helix structured toy data set
- pcaMethods::metaboliteDataA incomplete metabolite data set from an Arabidopsis coldstress experiment
- pcaMethods::metaboliteDataCompleteA complete metabolite data set from an Arabidopsis coldstress experiment
- PPMR::ExampleindividualIndividual level dataset
- PPMR::ExamplesummarySummary level dataset
- prop.coloc::.Random.seed
- prop.coloc::GLP1RGLP1R summary data included in the package
- proxysnps::ind
- RadialMR::data_radialTwo Sample Summary GWAS data published in Do et al (2014).
- RMR.ICP::block_inf1Example datasets for RMR-ICP
- RMR.ICP::gamma1_IndepExample datasets for RMR-ICP
- RMR.ICP::gamma1_LDExample datasets for RMR-ICP
- RMR.ICP::Gamma2_IndepExample datasets for RMR-ICP
- RMR.ICP::Gamma2_LDExample datasets for RMR-ICP
- RMR.ICP::RExample datasets for RMR-ICP
- RMR.ICP::se1_IndepExample datasets for RMR-ICP
- RMR.ICP::se1_LDExample datasets for RMR-ICP
- RMR.ICP::se2_IndepExample datasets for RMR-ICP
- RMR.ICP::se2_LDExample datasets for RMR-ICP
- RMVMR::rawdat_rmvmrRaw multivariable MR summary data using lipid fractions as exposures and systolic blood pressure as an outcome.
- robvis::data_bias_directionExample directional risk-of-bias dataset
- robvis::data_quadasExample QUADAS-2 assessment dataset
- robvis::data_quipsExample QUIPS assessment dataset
- robvis::data_rob1Example ROB1 assessment dataset
- robvis::data_rob2Example ROB2.0 assessment dataset
- robvis::data_rob2_clusterExample ROB2.0 (cluster variant) assessment dataset
- robvis::data_robins_eExample ROBINS-E assessment
- robvis::data_robins_iExample ROBINS-I assessment dataset
- SlopeHunter::data_exampleSimulated effects on quantitative incidence and prognosis traits
- SUMnlmr::bmi_acmHunt dataset containing the allele score-associations with bmi and all cause mortality, by 100 quantiles of residual BMI. As used in the paper "Body mass index and all cause mortality in HUNT and UK Biobank studies: linear and non-linear mendelian randomisation analyses" https://doi.org/10.1136/bmj.l1042
- SUMnlmr::generated_dataArtificial genetic & phenotype data, for purposes of package tests
- SUMnlmr::LDL_CADUK Biobank dataset containing the allele score-associations with ldl-cholesterol and CAD diagnosis, by 10 quantiles of residual ldl.
- SUMnlmr::LDL_CAD_covarUK Biobank dataset containing the allele score-associations with ldl-cholesterol and CAD diagnosis adjusted for age, sex and first 10 principle components, by 10 quantiles of residual ldl.
- triangulate::beta_carotene_dataBeta-carotene RoB Judgments (Raw) Domain-level risk of bias judgments for 15 studies of beta-carotene and cardiovascular outcomes.
- triangulate::dat_biasExample risk of bias assessments
- triangulate::dat_bias_valuesExample priors for the bias adjustment
- triangulate::dat_indExample indirectness assessments
- triangulate::dat_ind_valuesExample priors for indirectness adjustment
