Package: MVMR.CUE 1.0

Qing Cheng

MVMR.CUE: Multivariable Mendelian randomization accounting for complex correlated horizontal pleiotropy while elucidating shared genetic etiology

Multivariable Mendelian randomization accounting for complex correlated horizontal pleiotropy while elucidating shared genetic etiology.

Authors:Qing Cheng [aut, cre]

MVMR.CUE_1.0.tar.gz
MVMR.CUE_1.0.zip(r-4.7)MVMR.CUE_1.0.zip(r-4.6)MVMR.CUE_1.0.zip(r-4.5)
MVMR.CUE_1.0.tgz(r-4.6-x86_64)MVMR.CUE_1.0.tgz(r-4.6-arm64)MVMR.CUE_1.0.tgz(r-4.5-x86_64)MVMR.CUE_1.0.tgz(r-4.5-arm64)
MVMR.CUE_1.0.tar.gz(r-4.7-arm64)MVMR.CUE_1.0.tar.gz(r-4.7-x86_64)MVMR.CUE_1.0.tar.gz(r-4.6-arm64)MVMR.CUE_1.0.tar.gz(r-4.6-x86_64)
MVMR.CUE_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MVMR.CUE/json (API)

# Install 'MVMR.CUE' in R:
install.packages('MVMR.CUE', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/remlapmot/mvmr.cue/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
Datasets:
  • gamma1 - Example MVMR Summary Statistics
  • Gamma2 - Example MVMR Summary Statistics
  • se1 - Example MVMR Summary Statistics
  • se2 - Example MVMR Summary Statistics

On CRAN:

Conda:

openblascppjags

2.00 score 1 scripts 16 exports 93 dependencies

Last updated from:b6b793182f (on suggestions). Checks:13 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK200
linux-devel-x86_64OK220
source / vignettesOK231
linux-release-arm64OK194
linux-release-x86_64OK196
macos-release-arm64OK128
macos-release-x86_64OK343
macos-oldrel-arm64OK139
macos-oldrel-x86_64OK467
windows-develOK187
windows-releaseOK178
windows-oldrelOK396
wasm-releaseOK143

Exports:cv.mvmr_lassogenRawmr_horsemvmr_horsemvmr_lassomvmr_med_bootmvmr_medianmvmr_robustMVMRCUEMVMRCUEfunMVMRCUEIndepSampleMVMRCUEoverlapfunrcpparma_bothproductsrcpparma_hello_worldrcpparma_innerproductrcpparma_outerproduct

Dependencies:abindarrangementsaskpassbase64encbootbslibcachemclicodacodetoolscpp11crosstalkcurldata.tableDEoptimRdigestdplyrevaluatefarverfastmapfontawesomeforeachfsgenericsggplot2glmnetgluegmpgtablehighrhtmltoolshtmlwidgetshttrisobanditeratorsiterpcjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixModelsmemoiseMendelianRandomizationmimemvtnormnumDerivopensslotelpillarpkgconfigplotlypromisespurrrquantregR2jagsR2WinBUGSR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenrjagsrjsonrlangrmarkdownrobustbaseS7sassscalesshapeSparseMstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml