Package: RMR.ICP 1.0

Qing Cheng

RMR.ICP: Robust Mendelian Randomization method to account for Idiosyncratic and Correlated Pleiotropy

Robust Mendelian Randomization method to account for Idiosyncratic and Correlated Pleiotropy.

Authors:Qing Cheng [aut, cre]

RMR.ICP_1.0.tar.gz
RMR.ICP_1.0.zip(r-4.7)RMR.ICP_1.0.zip(r-4.6)RMR.ICP_1.0.zip(r-4.5)
RMR.ICP_1.0.tgz(r-4.6-x86_64)RMR.ICP_1.0.tgz(r-4.6-arm64)RMR.ICP_1.0.tgz(r-4.5-x86_64)RMR.ICP_1.0.tgz(r-4.5-arm64)
RMR.ICP_1.0.tar.gz(r-4.7-arm64)RMR.ICP_1.0.tar.gz(r-4.7-x86_64)RMR.ICP_1.0.tar.gz(r-4.6-arm64)RMR.ICP_1.0.tar.gz(r-4.6-x86_64)
RMR.ICP_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
RMR.ICP/json (API)

# Install 'RMR.ICP' in R:
install.packages('RMR.ICP', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/remlapmot/rmr.icp/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On CRAN:

Conda:

openblascppopenmp

2.00 score 2 scripts 12 exports 20 dependencies

Last updated from:389a55e42d (on suggestions). Checks:13 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK166
linux-devel-x86_64OK155
source / vignettesOK198
linux-release-arm64OK177
linux-release-x86_64OK169
macos-release-arm64OK171
macos-release-x86_64OK214
macos-oldrel-arm64OK91
macos-oldrel-x86_64OK231
windows-develOK178
windows-releaseOK162
windows-oldrelOK153
wasm-releaseOK127

Exports:EstRhogenRawGenogenSumStatrcpparma_bothproductsrcpparma_hello_worldrcpparma_innerproductrcpparma_outerproductReadSummaryStatRMRICPRMRICPindepRMRICPSimtraceplot

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemvtnormR6RColorBrewerRcppRcppArmadillorlangS7scalesvctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Robust Mendelian Randomization to account for Idiosyncratic and Correlated PleiotropyRMR.ICP-package
Example datasets for RMR-ICPblock_inf1 gamma1_Indep gamma1_LD Gamma2_Indep Gamma2_LD R se1_Indep se1_LD se2_Indep se2_LD
Simulation helpers for RMR-ICPgenRawGeno genSumStat traceplot
Set of functions in example RcppArmadillo packagercpparma_bothproducts rcpparma_hello_world rcpparma_innerproduct rcpparma_outerproduct
Read and prepare GWAS summary statistics for RMR-ICPEstRho ReadSummaryStat
Robust Mendelian Randomization accounting for Idiosyncratic and Correlated PleiotropyRMRICP RMRICPindep RMRICPSim