Package: SlopeHunter 1.1.0

Osama Mahmoud

SlopeHunter: Slope-Hunter: A ROBUST METHOD FOR COLLIDER BIAS CORRECTION IN CONDITIONAL GENOME-WIDE ASSOCIATION STUDIES

Studying genetic associations with prognosis (e.g. survival, disability, subsequent disease events) is problematic due to selection bias - also termed index event bias or collider bias - whereby selection on disease status can induce associations between causes of incidence with prognosis. The Slope-Hunter approach adjusts genetic associations for this bias assuming that the contribution of the set of genetic variants affecting incidence only to the heritability of incidence is at least as large as the contribution of those affecting both incidence and prognosis.

Authors:Osama Mahmoud [aut, cre, cph]

SlopeHunter_1.1.0.tar.gz
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SlopeHunter_1.1.0.tgz(r-4.4-any)SlopeHunter_1.1.0.tgz(r-4.3-any)
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SlopeHunter.pdf |SlopeHunter.html
SlopeHunter/json (API)

# Install 'SlopeHunter' in R:
install.packages('SlopeHunter', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/osmahmoud/slopehunter/issues

Datasets:
  • data_example - Simulated effects on quantitative incidence and prognosis traits

On CRAN:

2.08 score 24 scripts 7 exports 72 dependencies

Last updated 2 years agofrom:b0686fe0c7. Checks:OK: 1 NOTE: 6. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 27 2024
R-4.5-winNOTEOct 27 2024
R-4.5-linuxNOTEOct 27 2024
R-4.4-winNOTEOct 27 2024
R-4.4-macNOTEOct 27 2024
R-4.3-winNOTEOct 27 2024
R-4.3-macNOTEOct 27 2024

Exports:format_dataharmonise_effectshuntLD_pruneread_incidenceread_prognosisSHadj

Dependencies:askpassbase64encbslibcachemclicolorspacecpp11crosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrieugwasrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmclustmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalesstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml