Package: SlopeHunter 1.1.0
SlopeHunter: Slope-Hunter: A ROBUST METHOD FOR COLLIDER BIAS CORRECTION IN CONDITIONAL GENOME-WIDE ASSOCIATION STUDIES
Studying genetic associations with prognosis (e.g. survival, disability, subsequent disease events) is problematic due to selection bias - also termed index event bias or collider bias - whereby selection on disease status can induce associations between causes of incidence with prognosis. The Slope-Hunter approach adjusts genetic associations for this bias assuming that the contribution of the set of genetic variants affecting incidence only to the heritability of incidence is at least as large as the contribution of those affecting both incidence and prognosis.
Authors:
SlopeHunter_1.1.0.tar.gz
SlopeHunter_1.1.0.zip(r-4.5)SlopeHunter_1.1.0.zip(r-4.4)SlopeHunter_1.1.0.zip(r-4.3)
SlopeHunter_1.1.0.tgz(r-4.4-any)SlopeHunter_1.1.0.tgz(r-4.3-any)
SlopeHunter_1.1.0.tar.gz(r-4.5-noble)SlopeHunter_1.1.0.tar.gz(r-4.4-noble)
SlopeHunter_1.1.0.tgz(r-4.4-emscripten)SlopeHunter_1.1.0.tgz(r-4.3-emscripten)
SlopeHunter.pdf |SlopeHunter.html✨
SlopeHunter/json (API)
# Install 'SlopeHunter' in R: |
install.packages('SlopeHunter', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/osmahmoud/slopehunter/issues
- data_example - Simulated effects on quantitative incidence and prognosis traits
Last updated 2 years agofrom:b0686fe0c7. Checks:OK: 1 NOTE: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 27 2024 |
R-4.5-win | NOTE | Oct 27 2024 |
R-4.5-linux | NOTE | Oct 27 2024 |
R-4.4-win | NOTE | Oct 27 2024 |
R-4.4-mac | NOTE | Oct 27 2024 |
R-4.3-win | NOTE | Oct 27 2024 |
R-4.3-mac | NOTE | Oct 27 2024 |
Exports:format_dataharmonise_effectshuntLD_pruneread_incidenceread_prognosisSHadj
Dependencies:askpassbase64encbslibcachemclicolorspacecpp11crosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrieugwasrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmclustmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalesstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml