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Package: alspac 0.48.4

Gibran Hemani

alspac: Data dictionary for ALSPAC

Functions to search and extract variables based on keywords from the ALSPAC data dictionary.

Authors:Gibran Hemani [aut, cre], Matthew Suderman [aut]

alspac_0.48.4.tar.gz
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alspac.pdf |alspac.html✨
alspac/json (API)

# Install 'alspac' in R:

install.packages('alspac', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/explodecomputer/alspac/issues

Datasets:

current - Current data

On CRAN:

4.84 score 11 stars 47 scripts 12 exports 34 dependencies

Last updated 2 months agofrom:0260aa829f. Checks:1 OK, 6 WARNING. Indexed: no.

Target	Result	Latest binary
Doc / Vignettes	OK	Dec 22 2024
R-4.5-win	WARNING	Dec 22 2024
R-4.5-linux	WARNING	Dec 22 2024
R-4.4-win	WARNING	Dec 22 2024
R-4.4-mac	WARNING	Dec 22 2024
R-4.3-win	WARNING	Dec 22 2024
R-4.3-mac	WARNING	Dec 22 2024

Exports:createDictionary dictionaryGood extractDataset extractVars extractWebOutput filterVars findVars getDefaultDataDir readExclusions removeExclusions setDataDir updateDictionaries

Dependencies:bit bit64 cli clipr cpp11 crayon dplyr fansi forcats generics glue haven hms lifecycle magrittr pillar pkgconfig plyr prettyunits progress R6 Rcpp readr readstata13 rlang stringi stringr tibble tidyselect tzdb utf8 vctrs vroom withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add data sources information to the dictionary from the data/sources.csv file. See generateSourcesSpreadsheet() for details about creating this file. This information is used when decide which data values to remove for participants who have withdrawn consent.	addSourcesToDictionary
Create a dictionary from ALSPAC Stata files	createDictionary
Current data	current
Checks a dictionary	dictionaryGood
Extract a dataset for external ALSPAC users	extractDataset
Extract variables from data	extractVars
Extract variables exported from the ALSPAC variable lookup web app	extractWebOutput
Filter duplicate variables from findVars	filterVars
Find variables	findVars
This function was used to initially create the data/sources.csv spreadsheet which provides the source of data for each data file ('obj') in the dictionary. This information is then used to determine which bits of data to remove to satisfy exclusion lists. Sources include mother, mother_clinic, mother_quest, partner, partner_clinic, partner_quest, child_based and child_completed. Sources can for the most part be determined automatically from the 'path' information provided for each variable in the dictionary.	generateSourcesSpreadsheet
Guess the default data directory	getDefaultDataDir
Get list of ALNs to exclude	readExclusions
Remove data for participants who have withdrawn consent.	removeExclusions
Set the data directory	setDataDir
Update dictionaries	updateDictionaries