Package: gwasrapidd 0.99.18

Ramiro Magno

gwasrapidd: 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

'GWAS' R 'API' Data Download. This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by accessing the 'REST' 'API' <https://www.ebi.ac.uk/gwas/rest/docs/api/>.

Authors:Ramiro Magno [aut, cre], Ana-Teresa Maia [aut], CINTESIS [cph, fnd], Pattern Institute [cph, fnd]

gwasrapidd_0.99.18.tar.gz
gwasrapidd_0.99.18.zip(r-4.7)gwasrapidd_0.99.18.zip(r-4.6)gwasrapidd_0.99.18.zip(r-4.5)
gwasrapidd_0.99.18.tgz(r-4.6-any)gwasrapidd_0.99.18.tgz(r-4.5-any)
gwasrapidd_0.99.18.tar.gz(r-4.7-any)gwasrapidd_0.99.18.tar.gz(r-4.6-any)
gwasrapidd_0.99.18.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gwasrapidd/json (API)
NEWS

# Install 'gwasrapidd' in R:
install.packages('gwasrapidd', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ramiromagno/gwasrapidd/issues

Pkgdown/docs site:https://rmagno.eu

Datasets:

On CRAN:

Conda:

thirdpartyclientbiomedicalinformaticsgenomewideassociationsnpassociation-studiesgwas-cataloghumanrest-clienttraittrait-ontology

8.37 score 103 stars 1 packages 85 scripts 839 downloads 2 mentions 32 exports 54 dependencies

Last updated from:86b4acfcc9. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK171
source / vignettesOK250
linux-release-x86_64OK177
macos-release-arm64OK110
macos-oldrel-arm64OK108
windows-develOK165
windows-releaseOK114
windows-oldrelOK114
wasm-releaseOK172

Exports:%>%association_to_studyassociation_to_traitassociation_to_variantbindexists_variantget_associationsget_child_efoget_metadataget_studiesget_traitsget_variantsintersectis_ebi_reachablenopen_in_dbsnpopen_in_gtexopen_in_gwas_catalogopen_in_pubmedsetdiffsetequalstudy_to_associationstudy_to_traitstudy_to_varianttrait_to_associationtrait_to_studytrait_to_variantunionvariant_to_associationvariant_to_studyvariant_to_traitwrite_xlsx

Dependencies:askpassassertthatbriocallrclicpp11crayoncurldescdiffobjdplyrevaluatefsgenericsgluehmshttrjsonlitelifecyclelubridatemagrittrmimeopensslpillarpingrpkgbuildpkgconfigpkgloadplyrpraiseprettyunitsprocessxprogresspspurrrR6Rcpprlangrprojrootstringistringrsystestthattibbletidyrtidyselecttimechangetriebeardurltoolsutf8vctrswaldowithrwritexl

Frequently asked questions

Rendered fromfaq.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2022-12-23
Started: 2019-04-13

Getting started with gwasrapidd

Rendered fromgwasrapidd.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2023-06-04
Started: 2019-04-13

Variants associated with Body Mass Index (BMI)

Rendered frombmi_variants.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2022-12-23
Started: 2020-07-22

Readme and manuals

Help Manual

Help pageTopics
Pipe operator%>%
Map an association id to a study idassociation_to_study
Map an association id to an EFO trait idassociation_to_trait
Map an association id to a variant idassociation_to_variant
An S4 class to represent a set of GWAS Catalog associationsassociations-class
Bind GWAS Catalog objectsbind
GRCh38 human cytogenetic bands.cytogenetic_bands
Check if a variant exists in the Catalog.exists_variant
gwasrapidd entities' examplesassociations_ex01 associations_ex02 gc_examples studies_ex01 studies_ex02 traits_ex01 traits_ex02 variants_ex01 variants_ex02
Get GWAS Catalog associationsget_associations
Get all child terms of this trait in the EFO hierarchyget_child_efo
Get GWAS Catalog metadataget_metadata
Get GWAS Catalog studiesget_studies
Get GWAS Catalog EFO traitsget_traits
Get GWAS Catalog variantsget_variants
Is the GWAS Catalog REST API server reachable?is_ebi_reachable
Number of GWAS Catalog entitiesn n,associations-method n,studies-method n,traits-method n,variants-method
Browse dbSNP from SNP identifiers.open_in_dbsnp
Browse GTEx from SNP identifiers.open_in_gtex
Browse GWAS Catalog entities from the GWAS Web Graphical User Interfaceopen_in_gwas_catalog
Browse PubMed from PubMed identifiers.open_in_pubmed
Set operations on GWAS Catalog objects.intersect setdiff setequal setop union
An S4 class to represent a set of GWAS Catalog studiesstudies-class
Map a study id to an association idstudy_to_association
Map a study id to a EFO trait idstudy_to_trait
Map a study id to a variant idstudy_to_variant
Subset an associations objectsubset-associations [,associations,character,missing,missing-method [,associations,missing,missing,missing-method [,associations,numeric,missing,missing-method
Subset a studies objectsubset-studies [,studies,character,missing,missing-method [,studies,missing,missing,missing-method [,studies,numeric,missing,missing-method
Subset a traits objectsubset-traits [,traits,character,missing,missing-method [,traits,missing,missing,missing-method [,traits,numeric,missing,missing-method
Subset a variants objectsubset-variants [,variants,character,missing,missing-method [,variants,missing,missing,missing-method [,variants,numeric,missing,missing-method
Map an EFO trait id to an association idtrait_to_association
Map an EFO trait id to a study idtrait_to_study
Map an EFO trait id to a variant idtrait_to_variant
An S4 class to represent a set of GWAS Catalog EFO traits.traits-class
Map a variant id to an association idvariant_to_association
Map a variant id to a study idvariant_to_study
Map a variant id to an EFO traitvariant_to_trait
An S4 class to represent a set of GWAS Catalog variantsvariants-class
Export a GWAS Catalog object to xlsxwrite_xlsx