lizadarrous
. See also theR-universe documentation.Package: lhcMR 0.0.0.9000
lhcMR: Latent Heritable Confounder - Mendelian Randomisation
lhcMR esimates a causal effect between two traits while accounting for a possible latent heritable confounder acting on them, as well as sample overlap.
Authors:
lhcMR_0.0.0.9000.tar.gz
lhcMR_0.0.0.9000.zip(r-4.5)lhcMR_0.0.0.9000.zip(r-4.4)lhcMR_0.0.0.9000.zip(r-4.3)
lhcMR_0.0.0.9000.tgz(r-4.4-any)lhcMR_0.0.0.9000.tgz(r-4.3-any)
lhcMR_0.0.0.9000.tar.gz(r-4.5-noble)lhcMR_0.0.0.9000.tar.gz(r-4.4-noble)
lhcMR_0.0.0.9000.tgz(r-4.4-emscripten)lhcMR_0.0.0.9000.tgz(r-4.3-emscripten)
lhcMR.pdf |lhcMR.html✨
lhcMR/json (API)
# Install 'lhcMR' in R: |
install.packages('lhcMR', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lizadarrous/lhcmr/issues
Last updated 9 months agofrom:aee7f34874. Checks:OK: 1 WARNING: 6. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 20 2024 |
R-4.5-win | WARNING | Nov 20 2024 |
R-4.5-linux | WARNING | Nov 20 2024 |
R-4.4-win | WARNING | Nov 20 2024 |
R-4.4-mac | WARNING | Nov 20 2024 |
R-4.3-win | WARNING | Nov 20 2024 |
R-4.3-mac | WARNING | Nov 20 2024 |
Exports:calculate_SPlhc_mrmerge_sumstats
Dependencies:askpassbase64encbitbit64bootbslibcachemclassclicliprcodetoolscolorspaceCompQuadFormcowplotcpp11crayoncrosstalkcurldata.tabledigestdoParalleldplyre1071evaluatefansifarverfastmapfontawesomeforeachfsgdatagenericsGenomicSEMggplot2glmnetglueGPArotationgridExtragtablegtoolshighrhmshtmltoolshtmlwidgetshttrieugwasrisobanditeratorsjquerylibjsonlitekernlabknitrlabelinglaterlatticelavaanlazyevallifecyclelme4magrittrMASSmathjaxrMatrixmemoisemetametadatmetaformgcvmgsubmimeminqamixtoolsmnormtmr.rapsMRMixMRPRESSOmunsellnlmenloptrnortestnumDerivopensslpbapplypbivnormpillarpkgconfigplotlyplyrprettyunitsprogresspromisesproxypsychpurrrquadprogR.methodsS3R.ooR.utilsR6RadialMRrappdirsRColorBrewerRcppRcppEigenreadrreshape2rlangrmarkdownrslurmsassscalessegmentedshapesplitstackshapestringistringrsurvivalsystibbletidyrtidyselecttinytexTwoSampleMRtzdbutf8vctrsviridisLitevroomwhiskerwithrxfunxml2yaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Calculate starting points to be used in the likelihood function optimisation | calculate_SP |
Main trait pair analysis using LHC-MR | lhc_mr |
Merge summary statistics into a single input data frame | merge_sumstats |