lizadarrous. To fix this you can add URL: https://mrcieu.r-universe.dev/lhcMR to the package DESCRIPTION file. See also theR-universe documentation.Package: lhcMR 0.0.0.9000
lhcMR: Latent Heritable Confounder - Mendelian Randomisation
lhcMR esimates a causal effect between two traits while accounting for a possible latent heritable confounder acting on them, as well as sample overlap.
Authors:
lhcMR_0.0.0.9000.tar.gz
lhcMR_0.0.0.9000.zip(r-4.7-any)lhcMR_0.0.0.9000.zip(r-4.6-any)lhcMR_0.0.0.9000.zip(r-4.5-any)
lhcMR_0.0.0.9000.tgz(r-4.6-any)lhcMR_0.0.0.9000.tgz(r-4.5-any)
lhcMR_0.0.0.9000.tar.gz(r-4.7-any)lhcMR_0.0.0.9000.tar.gz(r-4.6-any)
lhcMR_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
lhcMR/json (API)
| # Install 'lhcMR' in R: |
| install.packages('lhcMR', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lizadarrous/lhcmr/issues
Last updated from:aee7f34874. Checks:7 WARNING, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | WARNING | 188 | ||
| source / vignettes | OK | 244 | ||
| linux-release | WARNING | 166 | ||
| macos-release | WARNING | 133 | ||
| macos-oldrel | WARNING | 158 | ||
| windows-devel | WARNING | 114 | ||
| windows-release | WARNING | 121 | ||
| windows-oldrel | WARNING | 125 | ||
| wasm-release | OK | 151 |
Exports:calculate_SPlhc_mrmerge_sumstats
Dependencies:askpassbase64encbitbit64bslibcachemclassclicliprcodetoolscolorspacecowplotcpp11crayoncrosstalkcurldata.tabledigestdoParalleldplyre1071evaluatefarverfastmapfontawesomeforeachfsgdatagenericsGenomicSEMggplot2glmnetglueGPArotationgridBasegridExtragtablegtoolshighrhmshtmltoolshtmlwidgetshttrieugwasrisobanditeratorsjquerylibjsonlitekernlabknitrlabelinglaterlatticelavaanlazyevallifecyclemagrittrMASSMatrixmemoisemgsubmimemixtoolsmnormtMRMixMRPRESSOnlmenumDerivopensslotelpbapplypbivnormpillarpkgconfigplotlyplyrprettyunitsprogresspromisesproxypsychpurrrquadprogR.methodsS3R.ooR.utilsR6RadialMRrappdirsRColorBrewerRcppRcppEigenreadrrlangrmarkdownrslurmS7sassscalessegmentedsfsmiscshapesimsalaparsplitstackshapestringistringrsurvivalsystibbletidyrtidyselecttinytexTwoSampleMRtzdbutf8vctrsviridisLitevroomwhiskerwithrxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate starting points to be used in the likelihood function optimisation | calculate_SP |
| Main trait pair analysis using LHC-MR | lhc_mr |
| Merge summary statistics into a single input data frame | merge_sumstats |