Package: metaboprep 1.0.1
metaboprep: Metabolomics data preparation and processing pipeline
Reads in raw Metabolon and Nightingale xls sheets and aids in data preparation of all metabolomics data sets.
Authors:
metaboprep_1.0.1.tar.gz
metaboprep_1.0.1.zip(r-4.5)metaboprep_1.0.1.zip(r-4.4)metaboprep_1.0.1.zip(r-4.3)
metaboprep_1.0.1.tgz(r-4.4-any)metaboprep_1.0.1.tgz(r-4.3-any)
metaboprep_1.0.1.tar.gz(r-4.5-noble)metaboprep_1.0.1.tar.gz(r-4.4-noble)
metaboprep_1.0.1.tgz(r-4.4-emscripten)metaboprep_1.0.1.tgz(r-4.3-emscripten)
metaboprep.pdf |metaboprep.html✨
metaboprep/json (API)
# Install 'metaboprep' in R: |
install.packages('metaboprep', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/remlapmot/metaboprep/issues
- ng_anno - Nightingale Health metabolomics annotation data set
Last updated 8 months agofrom:ee1cdc7579 (on suggestions). Checks:OK: 3 NOTE: 4. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 01 2024 |
R-4.5-win | OK | Nov 01 2024 |
R-4.5-linux | OK | Nov 01 2024 |
R-4.4-win | NOTE | Nov 01 2024 |
R-4.4-mac | NOTE | Nov 01 2024 |
R-4.3-win | NOTE | Nov 01 2024 |
R-4.3-mac | NOTE | Nov 01 2024 |
Exports:batch_normalizationcramerVeval.power.binaryeval.power.binary.imbalancedeval.power.contfeature_plotsfeature.describefeature.missingnessfeature.outliersfeature.sum.statsfeature.tree.independencefind.cont.effect.sizes.2.simfind.PA.effect.sizes.2.simgenerate_reportgreedy.pairwise.n.filterid.outliersmake.cor.matrixmake.treemedian_imputemet2batchmissingness.summultivariate.anovaoutlier.matrixoutlier.summaryoutlierspc.and.outlierspca.factor.analysispcapairs_bymooseperform.metabolite.qcread.in.metabolonread.in.nightingalerntransformrun.cont.power.make.plotrun.pa.imbalanced.power.make.plotsam.missingness.exclusionsample.missingnesssample.outlierssample.sum.statstotal.peak.areatree_and_independent_featuresvariable.by.factor
Dependencies:abindbackportsBiobaseBiocGenericsbootbroomcarcarDatacellrangerclicolorspacecorrplotcowplotcpp11crayonDerivdoBydplyrevaluatefansifarverFormulagenericsggplot2ggpubrggrepelggsciggsignifglueGPArotationgridExtragtablehighrhmsisobandknitrlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamnormtmodelrmunsellnFactorsnlmenloptrnnetnumDerivpbkrtestpcaMethodspillarpkgconfigpolynomprettyunitsprogresspsychpurrrpwrquantregR6RColorBrewerRcppRcppEigenreadxlrematchrlangrstatixscalesSparseMstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithrxfunyaml