Overview | Quick start | Using generate_summary() | Using generate_individual() | Built-in presets | Plotting simulated data | Output
This package is hidden from search results because it is not hosted in the universe of the upstream owner
noahlorinczcomi. To fix this you can add URL: https://mrcieu.r-universe.dev/simmrd to the package DESCRIPTION file. See also theR-universe documentation.Package: simmrd 0.0.1
Noah Lorincz-Comi
simmrd: Simulation of Mendelian Randomization data
This package generates simulation data to use in the evaluation of univariable or multivariable Mendelian Randomization methods. MR scenarios can include uncorrelated horizontal pleiotropy, correlated horizontal pleiotropy, weak instruments, winner's curse, and correlated SNP instruments.
Authors:
simmrd_0.0.1.tar.gz
simmrd_0.0.1.zip(r-4.7)simmrd_0.0.1.zip(r-4.6)simmrd_0.0.1.zip(r-4.5)
simmrd_0.0.1.tgz(r-4.6-any)simmrd_0.0.1.tgz(r-4.5-any)
simmrd_0.0.1.tar.gz(r-4.7-any)simmrd_0.0.1.tar.gz(r-4.6-any)
simmrd_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
simmrd/json (API)
| # Install 'simmrd' in R: |
| install.packages('simmrd', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/noahlorinczcomi/simmrd/issues
Last updated from:75a296296a. Checks:7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 176 | ||
| source / vignettes | OK | 235 | ||
| linux-release-x86_64 | NOTE | 190 | ||
| macos-release-arm64 | NOTE | 119 | ||
| macos-oldrel-arm64 | NOTE | 110 | ||
| windows-devel | NOTE | 110 | ||
| windows-release | NOTE | 119 | ||
| windows-oldrel | NOTE | 108 | ||
| wasm-release | OK | 154 |
Exports:adj_overlapgenerate_individualgenerate_summarylist_presetsload_presetplot_simdataplot_simdata_lowerset_params
Dependencies:abindbackportsBHbootbroomcarcarDataclicolorspacecorrplotcowplotcpp11DerivdoBydplyrfarverforecastFormulafracdiffgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtableisobandlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmgcvminqamodelrmvnfastnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpolynompurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrstatixS7scalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Construct a GWAS overlap proportion matrix | adj_overlap |
| Generate individual-level simulated GWAS data | generate_individual |
| Generate summary-level simulated GWAS data | generate_summary |
| List available simulation presets | list_presets |
| Load a named simulation preset | load_preset |
| Plot simulated data | plot_simdata |
| Helper function | plot_simdata_lower |
| Set simulation parameters | set_params |
