remlapmot. To fix this you can add URL: https://mrcieu.r-universe.dev/MRAPSS to the package DESCRIPTION file. See also theR-universe documentation.Package: MRAPSS 0.0.0.9000
MRAPSS: Mendelian Randomization Accounting for Pleiotropy and Sample Structure
Implements the MR-APSS approach to test for the causal effects between an exposure and an outcome disease. MR-APSS is a unified approach to Mendelian Randomization accounting for polygenicity, pleiotropy and sample structure using genome-wide summary statistics. Specifically, MR-APSS uses a background-foreground model to characterize both SNP-exposure effects and SNP-outcome effects estimates, where the background model accounts for confounding from genetic correlation and sample structure and the foreground model captures the valid signal for causal inference.
Authors:
MRAPSS_0.0.0.9000.tar.gz
MRAPSS_0.0.0.9000.zip(r-4.7-any)MRAPSS_0.0.0.9000.zip(r-4.6-any)MRAPSS_0.0.0.9000.zip(r-4.5-any)
MRAPSS_0.0.0.9000.tgz(r-4.6-any)MRAPSS_0.0.0.9000.tgz(r-4.5-any)
MRAPSS_0.0.0.9000.tar.gz(r-4.7-any)MRAPSS_0.0.0.9000.tar.gz(r-4.6-any)
MRAPSS_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MRAPSS/json (API)
| # Install 'MRAPSS' in R: |
| install.packages('MRAPSS', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/remlapmot/mr-apss/issues
- C - Estimated C matrix for the BMI-T2D example
- MHC.SNPs - SNPs in the MHC region
- MRdat - Harmonized instrument data for the BMI-T2D example
- Omega - Estimated Omega matrix for the BMI-T2D example
- w_hm3.snplist - HapMap 3 SNP list
Last updated from:ac1e457511 (on suggestions). Checks:9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 242 | ||
| source / vignettes | OK | 242 | ||
| linux-release | OK | 238 | ||
| macos-release | OK | 196 | ||
| macos-oldrel | OK | 247 | ||
| windows-devel | OK | 188 | ||
| windows-release | OK | 191 | ||
| windows-oldrel | OK | 221 | ||
| wasm-release | OK | 140 |
Exports:clumpest_parasformat_dataMR_EM_fix_rf_funcMR_fix_rfMRAPSSMRplotsensitivity
Dependencies:askpassbitbit64clicliprcpp11crayoncurldata.tabledplyrexpmfarvergenericsggplot2gluegtablehmshttrieugwasrisobandjsonlitelabelinglatticelifecyclemagrittrMatrixmimemvtnormopensslpillarpkgconfigprettyunitsprogressR6RColorBrewerreadrrlangS7scalessystibbletidyselecttzdbutf8vctrsviridisLitevroomwithr
