Package: MRAPSS 0.0.0.9000

Xianghong HU

MRAPSS: The MRAPSS package implement the MR-APPSS approach to test for the causal effect of an exposure on a outcome disease.

The MRAPSS package implement the MR-APPSS approach to test for the causal effects between an exposure and a outcome disease. The MR-APPSS is a unified approach to Mendelian Randomization accounting for polygenicity, pleiotropy and sample structure using genome-wide summary statistics. Specifically, MR-APPSS uses a background-foreground model to characterize both SNP-exposure effects and SNP-outcome effects estimates, where the background model accounts for confounding from genetic correlation and sample structure and the foreground model captures the valid signal for causal inference.

Authors:Xianghong HU [aut, cre]

MRAPSS_0.0.0.9000.tar.gz
MRAPSS_0.0.0.9000.zip(r-4.5)MRAPSS_0.0.0.9000.zip(r-4.4)MRAPSS_0.0.0.9000.zip(r-4.3)
MRAPSS_0.0.0.9000.tgz(r-4.4-any)MRAPSS_0.0.0.9000.tgz(r-4.3-any)
MRAPSS_0.0.0.9000.tar.gz(r-4.5-noble)MRAPSS_0.0.0.9000.tar.gz(r-4.4-noble)
MRAPSS_0.0.0.9000.tgz(r-4.4-emscripten)MRAPSS_0.0.0.9000.tgz(r-4.3-emscripten)
MRAPSS.pdf |MRAPSS.html
MRAPSS/json (API)

# Install 'MRAPSS' in R:
install.packages('MRAPSS', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/yanglabhkust/mr-apss/issues

On CRAN:

4.46 score 41 stars 28 scripts 8 exports 52 dependencies

Last updated 4 days agofrom:5baa31994d. Checks:1 OK, 6 ERROR. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 09 2025
R-4.5-winERRORJan 09 2025
R-4.5-linuxERRORJan 09 2025
R-4.4-winERRORJan 09 2025
R-4.4-macERRORJan 09 2025
R-4.3-winERRORJan 09 2025
R-4.3-macERRORJan 09 2025

Exports:clumpest_parasformat_dataMR_EM_fix_rf_funcMR_fix_rfMRAPSSMRplotsensitivity

Dependencies:askpassbitbit64clicliprcolorspacecpp11crayoncurldplyrexpmfansifarvergenericsggnewscaleggplot2gluegtablehmshttrieugwasrisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigprettyunitsprogressR6RColorBrewerreadrrlangscalessystibbletidyselecttzdbutf8vctrsviridisLitevroomwithr