Package: epigraphdb 0.2.3

Yi Liu

epigraphdb: Interface Package for the 'EpiGraphDB' Platform

The interface package to access data from the 'EpiGraphDB' <https://epigraphdb.org> platform. It provides easy access to the 'EpiGraphDB' platform with functions that query the corresponding REST endpoints on the API <https://api.epigraphdb.org> and return the response data in the 'tibble' data frame format.

Authors:Yi Liu [cre, aut], Valeriia Haberland [aut], Marina Vabistsevits [aut], Tom Gaunt [aut], MRC IEU [cph]

epigraphdb_0.2.3.tar.gz
epigraphdb_0.2.3.zip(r-4.5)epigraphdb_0.2.3.zip(r-4.4)epigraphdb_0.2.3.zip(r-4.3)
epigraphdb_0.2.3.tgz(r-4.4-any)epigraphdb_0.2.3.tgz(r-4.3-any)
epigraphdb_0.2.3.tar.gz(r-4.5-noble)epigraphdb_0.2.3.tar.gz(r-4.4-noble)
epigraphdb_0.2.3.tgz(r-4.4-emscripten)epigraphdb_0.2.3.tgz(r-4.3-emscripten)
epigraphdb.pdf |epigraphdb.html✨
epigraphdb/json (API)
NEWS

# Install 'epigraphdb' in R:
install.packages('epigraphdb', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mrcieu/epigraphdb-r/issues

On CRAN:

api-clientbioinformaticsepidemiologygraph-databasemendelian-randomizationphenotypes

5.91 score 27 stars 9 scripts 339 downloads 23 exports 20 dependencies

Last updated 2 years agofrom:1cd05d8426. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 10 2024
R-4.5-winOKNov 10 2024
R-4.5-linuxOKNov 10 2024
R-4.4-winOKNov 10 2024
R-4.4-macOKNov 10 2024
R-4.3-winOKNov 10 2024
R-4.3-macOKNov 10 2024

Exports:%>%confoundercypherdrugs_risk_factorsgenetic_corliterature_gwasmappings_gene_to_proteinmeta_nodes_listmeta_nodes_list_nodemeta_nodes_search_nodemeta_rels_listmeta_rels_list_relmrobs_corontology_gwas_efopathwaypqtlpqtl_listpqtl_pleioprotein_in_pathwayquery_epigraphdbxqtl_multi_snp_mrxqtl_single_snp_mr

Dependencies:askpassclicurlfansigluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigpurrrR6rlangsystibbleutf8vctrs

About

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Last update: 2022-01-14
Started: 2019-11-10

Getting started with EpiGraphDB in R

Rendered fromgetting-started-with-epigraphdb-r.Rmdusingknitr::rmarkdownon Nov 10 2024.

Last update: 2022-01-14
Started: 2020-09-29

Meta functionalities of the EpiGraphDB platform

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Last update: 2022-01-14
Started: 2020-06-01

Options

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Last update: 2022-01-14
Started: 2019-11-11

Using EpiGraphDB API

Rendered fromusing-epigraphdb-api.Rmdusingknitr::rmarkdownon Nov 10 2024.

Last update: 2022-01-14
Started: 2019-11-10

Using EpiGraphDB R package

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Last update: 2022-01-14
Started: 2019-07-04