Package: gpmapr 0.0.1.0
Gibran Hemani
gpmapr: Query the OpenGWAS genotype-phenotype map
This package is a simple wrapper around the OpenGWAS genotype-phenotype map API.
Authors:
gpmapr_0.0.1.0.tar.gz
gpmapr_0.0.1.0.zip(r-4.7)gpmapr_0.0.1.0.zip(r-4.6)gpmapr_0.0.1.0.zip(r-4.5)
gpmapr_0.0.1.0.tgz(r-4.6-any)gpmapr_0.0.1.0.tgz(r-4.5-any)
gpmapr_0.0.1.0.tar.gz(r-4.7-any)gpmapr_0.0.1.0.tar.gz(r-4.6-any)
gpmapr_0.0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gpmapr/json (API)
| # Install 'gpmapr' in R: |
| install.packages('gpmapr', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrcieu/gpmapr/issues
Last updated from:772eb97935. Checks:5 NOTE, 2 OK, 1 ERROR, 1 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 205 | ||
| source / vignettes | OK | 657 | ||
| linux-release-x86_64 | NOTE | 192 | ||
| macos-release-arm64 | NOTE | 104 | ||
| macos-oldrel-arm64 | ERROR | 101 | ||
| windows-devel | WARNING | 128 | ||
| windows-release | NOTE | 117 | ||
| windows-oldrel | NOTE | 115 | ||
| wasm-release | OK | 138 |
Exports:all_genesall_traitsassociationsgenegenesget_all_gene_pleiotropiesget_all_variant_pleiotropiesget_gwashealth_apild_matrixld_proxiesregionsearch_gpmaptraittraitsupload_gwasvariantvariants
Dependencies:askpassbitbit64clicliprcpp11crayoncurldplyrgenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR6readrrlangstringistringrsystibbletidyrtidyselecttzdbutf8vctrsvroomwithr
GPMap tutorial: GWAS upload
Rendered fromtutorial-gwas-upload.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-03-26
Started: 2026-03-26
GPMap tutorial: Haemoglobin concentration case study
Rendered fromtutorial-case-study.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-04-09
Started: 2026-03-26
Choosing Instrumental Variables tutorial
Rendered fromtutorial-choosing-ivs.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-03-04
Started: 2026-03-04
Index of suspicion tutorial
Rendered fromtutorial-ios.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-03-04
Started: 2025-05-07
Tissue stratification tutorial
Rendered fromtutorial-tissue-stratification.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-03-04
Started: 2025-05-07
Trait clustering tutorial
Rendered fromtutorial-trait-clustering.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-03-04
Started: 2025-05-07
Trait comparison tutorial
Rendered fromtutorial-trait-comparison.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-03-04
Started: 2026-03-04
Using gpmapr
Rendered fromgpmapr.Rmdusingknitr::rmarkdownon Jun 22 2026.Last update: 2026-05-13
Started: 2025-08-07
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| All genes | all_genes |
| All traits | all_traits |
| Get Associations by SNP ID and Study ID | associations |
| Gene | gene |
| Genes | genes |
| Get All Gene Pleiotropies | get_all_gene_pleiotropies |
| Get All SNP Pleiotropies | get_all_variant_pleiotropies |
| Get a GWAS from the API | get_gwas |
| Get API Health | health_api |
| LD Matrix | ld_matrix |
| LD Proxies | ld_proxies |
| Region | region |
| Search the Genotype-Phenotype Map | search_gpmap |
| Trait | trait |
| Traits | traits |
| Upload a GWAS to the API | upload_gwas |
| Variant | variant |
| Variants | variants |
