Package: proxysnps 0.0.1

Kamil Slowikowski

proxysnps: Get proxy SNPs for a SNP in the 1000 Genomes Project

This package implements functions to query remote VCF files. You can use it to find proxy SNPs in linkage disequilibrium with SNPs of interest or to calculate allele frequencies in different populations.

Authors:Kamil Slowikowski [aut, cre]

proxysnps_0.0.1.tar.gz
proxysnps_0.0.1.zip(r-4.7)proxysnps_0.0.1.zip(r-4.6)proxysnps_0.0.1.zip(r-4.5)
proxysnps_0.0.1.tgz(r-4.6-any)proxysnps_0.0.1.tgz(r-4.5-any)
proxysnps_0.0.1.tar.gz(r-4.7-any)proxysnps_0.0.1.tar.gz(r-4.6-any)
proxysnps_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
proxysnps/json (API)

# Install 'proxysnps' in R:
install.packages('proxysnps', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/slowkow/proxysnps/issues

On CRAN:

Conda:

bioinformaticslinkage-disequilibriumsnpsstatistics

3.19 score 31 stars 8 scripts 3 exports 2 dependencies

Last updated from:9a9a3158d5. Checks:7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR164
source / vignettesOK196
linux-release-x86_64ERROR145
macos-release-arm64ERROR105
macos-oldrel-arm64ERROR115
windows-develERROR101
windows-releaseERROR115
windows-oldrelERROR99
wasm-releaseOK140

Exports:compute_ldget_proxiesget_vcf

Dependencies:bitopsRCurl