Package: proxysnps 0.0.1

Kamil Slowikowski

proxysnps: Get proxy SNPs for a SNP in the 1000 Genomes Project

This package implements functions to query remote VCF files. You can use it to find proxy SNPs in linkage disequilibrium with SNPs of interest or to calculate allele frequencies in different populations.

Authors:Kamil Slowikowski [aut, cre]

proxysnps_0.0.1.tar.gz
proxysnps_0.0.1.zip(r-4.7)proxysnps_0.0.1.zip(r-4.6)proxysnps_0.0.1.zip(r-4.5)
proxysnps_0.0.1.tgz(r-4.6-any)proxysnps_0.0.1.tgz(r-4.5-any)
proxysnps_0.0.1.tar.gz(r-4.7-any)proxysnps_0.0.1.tar.gz(r-4.6-any)
proxysnps_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
proxysnps/json (API)

# Install 'proxysnps' in R:
install.packages('proxysnps', repos = c('https://mrcieu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/slowkow/proxysnps/issues

On CRAN:

Conda:

bioinformaticslinkage-disequilibriumsnpsstatistics

3.19 score 31 stars 10 scripts 3 exports 2 dependencies

Last updated from:9a9a3158d5. Checks:7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR144
source / vignettesOK238
linux-release-x86_64ERROR164
macos-release-arm64ERROR119
macos-oldrel-arm64ERROR81
windows-develERROR104
windows-releaseERROR103
windows-oldrelERROR107
wasm-releaseOK182

Exports:compute_ldget_proxiesget_vcf

Dependencies:bitopsRCurl